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13-3990-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26432048 [Map]; Strand: w
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: intron4 (CDS)
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 13-3990-1 - 5-prime edge 
    GTGCCAGCTG CAACAGCTTC TCCATGGAGC CACTCTCCAT AACCAAAGCC 
    AGTTTCTATG GCCTGCAAAA TTAAGTGATG GGTGATGAGT GGATCTAGGC 
    CCGAAGAGAA GAAATGTCCA AGAGACCATC ATGGACTACT TACATGGCCA 
    AAGGTATGAC CCAAATTTAA GGTTGCTCGC AAGCCGCTTT CTTTCTCATC 
    TTGTGATACA ACGTCTGCCT TGTTTTCACA TGATCGCTTT ATAGCAAAAG 
    CTAATGCAGC TGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26431932 [Map]; Strand: w
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: intron5 (CDS)
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 13-3990-1 - 3-prime edge 
    GCTGGCACGG TATCTTTCTC TATCTGCGAT ATTGCTAACC ATCTTCTTCT 
    CTCCAAATTC GAGATTTGTT CACATTGTTA TATATACTCA GGTAATGGCA 
    GTGGACATGT CATATCGTCT TGGTTGGATC GATGAATCGA TTGTTAAGAG 
    AGTGAACAAG ATCCTAGTAC GGGCGAAATT GCCTACAACT CCGCCAGAGA 
    GCATGACCGT CAGCATGTTC AAGTCCATAA TGGCGGTGAG TTTTTAGTGA 
    ATT

AT5G66120.1

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 8426 Blast hits to 8421 proteins in 2521 species: Archae - 162; Bacteria - 5225; Metazoa - 16; Fungi - 182; Plants - 46; Viruses - 2; Other Eukaryotes - 2793 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR