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13-3999-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1364565 [Map]; Strand: w
      • AT1G04840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3999-1 - 3-prime edge 
    CTCATGTTAA GGCTTGGTGT GAAACCCGAT CGGCTAACTT TTCCGTTTGT 
    ACTCAAGTCT AATTCTAAAT TAGGTTTTAG ATGGTTGGGT AGGGCTCTTC 
    ATGCCGCGAC TTTGAAGAAT TTCGTTGACT GTGACTCCTT CGTCAGGTTA 
    TCATTGGTTG ATATGTACGC CAAAACCGGA CAATTAAAAC ATGCCTTCCA 
    AGTGTTCGAA GAAAGTCCTG ATAGAATCAA AAAGGAGAGT ATTTTGATAT 
    GGAATGTTTT GATTAATGGG TATTGTCGAG CCAAGGATAT GCATATGGCT 
    ACAACACTTT TTCGATCCAT GCCTGAGAGA AATTCAGGAT CTTGGAGTAC 
    TTTGATCAAG GGTTATGTTG ATAGCGGCGA GTTGAACAGA GCAAAGCAGC 
    TTTTTGAATT AATGCCAGAG AAAAATGTGG TGTCTTGGAC AACATTAATT 
    AATGGGTTTT CTCAAACTGG CGACTATGAA ACTGCGATTT CTACCTATTT 
    CGAGATGCTA GAGAAGGGCT TAAAGCCTAA TGAATACACA ATTGCTGCTG 
    TGCTCTCTGC ATGTTCAAAA TCTGGTGCTC TTGGATCAGG AATAAGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1364681 [Map]; Strand: w
      • AT1G04840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3999-1 - 5-prime edge 
    AACATGAGAA TGAAATGACG AACCGAAGAC TCGAAACGAG CATTCTCCGT 
    CAAACCACGG ATCAAAGCAT TTAAAACAAA AGGATTCCTC TCTTCAGAAT 
    TTCTGAAAAT CGAGAGGCTA TAATCCGGGG ACTTGAGAAG CGAAGAGCAA 
    GATACGAGCT GAGCAGCGAC GCGGCTACTG AGGACGCCGC GACGGAGGAT 
    CTGGGCGTGA ACATGGCGGA GACTTGCGGT GTCTTTACAG GCGTGAATCA 
    GAGATATGAA GTGAGACTCG TCCGGTGAGG CTTGACGATC GGCCGGAAAA 
    TAGATTTTAG CGGGAGAAGA TTTCGGTTTA AAAAGAACAG AAAGCGATTT 
    CATCGTACCT CAGTCAAAAC GCTCATCAGT CATCAGATCT CGCGGTGCAA 
    AAGACTCTTA TATATTTGGC TAGTGGCTAC TTATCTTAAC CGGATTAAAC 
    CGTATTGCTC TAAATATATC AAACCGGTTA ATTTGCGAAC CGGTTCAGAC 
    GAAAGCAGTA TGGAAATGTC ATTTTTTTTA CCTTAAAAGT TACAATGCAA 
    ACAACAAGAC GGATTAAACA GTAATGGAAG CT

AT1G04840.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1); Has 39151 Blast hits to 14409 proteins in 285 species: Archae - 0; Bacteria - 8; Metazoa - 167; Fungi - 139; Plants - 38292; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Link
InterPro Scan - TAIR