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13-4017-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6899666 [Map]; Strand: c
      • AT2G15840.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-4017-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTGT GAATTATAAA ATATGTATAA CTTAAACAAA
    AAAAACTACT GTATAACGTG TTTTGACTTT TTCTATAAAA AAAGGTTGAA
    AACCAAAATA AAATTGTCGA ATATTTCTGC GGTTTTACAG GTTTTAATTC
    TTGGCAATTA TAAAATCCTA TTATAATTCA TAAGTGTTCA GGATAAGTAT
    TAGAGTTTAA CGATGCCGAA GCGTTTAAAC CGATCAAAGA GGTACCTTAC
    GACTTGGACG TGATCTGGAA TTGGATGAAG TCAGGGAAGA TATCACAAGC
    GAATATCAAC CACTTATCAC CGATCAAGTG TCTCTCCAAA TCTGAGAAAA
    AAGGAAAATC GAAGATTCAA GTCCGAAAAA TAAAGAAAGA AGACATATAC
    CGACTACCCC CTTATATAAA TAGGGAGGAC TTGATTCGAG AAGATGATTC
    GCAATTTCAT ACAGAAAGCC ATAGTTTTCT TTTTGTTCTT GTATAAACCC
    TAACTTGTTC TTGAAGCAAT TTTAAACCAC TTTGTAATCG ANAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13589928 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 5954; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11872; Region: intergenic
    Flanking Genome Sequence: 13-4017-1 - 3-prime edge
    GNGTNGCTCG TCCGTTNCTA ATCGACAGTA CCANGCCCGG NGAACACAAC 
    NANGNANGNT GGTTAGNGTT TTGGAGTCGA NTATNACTTG ATCTCATGTG
    TNTGATTGAG TATNNGGAAC TNNAACCGNA NNCGNNTCTT ANANGCGAAA
    GAANNGNNTC CTTGTTAAAA GACACCNAGC CAANGACTCC TATGGACTTT
    GGNTACAACC TGAAAGCTAC CNNGCNCAGG NCGGCGANGC ACGCNGTGCT
    NTTATNTTGG GTGNTNTNAN ANCNNNCGNA NNTAANATNT GNGNNNNCGC
    TTGAGANNGC CTTGCCGCNG GGGGCCNNNA ANCNANANNN TCCCCCNNGT
    TTNNNNNANC GNNCNCTTNT NTNNAATAAG TGANNNGGAG AGNGNGGGGG
    TCTANGGGAC CGNGNNCCTT TNCNGNNCGA TTCNTTTTTG NNGNCACGTT
    NGTGTGGNNC GNGNTATNNN TNANANACTT TCNNGTTCNN TNNCCNCACG
    NNGTGCGCGN NNATANATNG GNNTATTTNT TAAATTAAAA AAAAACCNNN
    NCNCNNNCNC NGCNCCCCCC AATNNCTGGN TTNTNNNTCN CCGNNNGCNN
    NTCGTNTNNG TNGCGCGNNA CGTTGATNNG NNTNTCCGCG NGTTNNNNCN
    ANNNAGCCGT TGGNGAGNNT NNCGCANNCN GAACNGTNTN CNATTTTCNA
    NTNCANCCNN NNGTCCGNCN NTNTCCNGNC CNCCNTATTG GGTNTNCNNT
    TATCCNTAAA CCGNGNNCAN NTACANGGGT AAGCACACCG TTNATTGNCN
    TCGGGTNTCC TNTAANNNNN GGTTNTTGGG NNNNNCCCNN CGNGGA

AT2G15840.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR