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13-4060-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2982690 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4060-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    ATTTATCTGG TAACTGATTA ATCCAACCAA CAATTTCTTC TTGAATCACT 
    CGCAGTGTGT TCCTCCCACG CCCAATCTCC ATCTTCCCAA AGTGAGGCCT 
    TAGCTTCTCC ACAAACTCTC TCAACAGTGG TCTCATCTCT TTCTCCTTCA 
    TCACTCTCAA CGCAGACTGT ACCACAAAGT TGCCAAACTT ATCAGTTGTC 
    ATTCTTACCC ATTCTTTGGC ATTCCCTCTA AACTCCTCCA ACACTTGGTC 
    TCTCGCAAAA TCCGATTTTA AACACTTCTC CACCACATAG CTTCCTTGTC 
    TCTCCATCGC TAACCTGAAG AAACTTCCAC GAAGTCTCTC AGCGATTGCG 
    GTTGTTGCAA CCGGATTCTG AAGTATCAGA ATGTTCTGCA CAACGTGTGT 
    TCCATAGGGG TCAAAAGATA ACCAATCTGC GTTGTTTGCG ACGCACTCAA 
    AGATTAGGTC TCTGTATATG CCTCTGATTT CCTGAAGCAC ATTGTTTAGG 
    GCAAGGCATC CAGTTTCTAG CCTGGCAAGG TGCAGAGTGT ATTCGTAAGT 
    GAGCTTGTAG AGAGACTCCT TCTTGGTTTT ATCGACGGCT CGTATAGCGG 
    GGATGATCAA GCCACGACCA TACTTATCGC TCATGAGCAA NAANAAGTTT 
    GGTGTCGACG GCGCANAATA AGANATGGTC TAAGCTAGGG CTGCGTCTAA 
    AGANGATACG TA

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR