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13-4081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3472614 [Map]; Strand: c
      • AT1G10530.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-ter...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-4081-1 - 5-prime edge 
    AGTAGCAGAG TGTGTGGACC TACCCTCGCC GGCAAACTTT TTCCTCTCTT 
    CCGCTTTCTC CTTTTTTCAC AGAGTTCTAC TCTGTTTTCA TTTTTTCTTC 
    TTTCTTTCGT TTCTTAGGTA ACATCAAAAG ATAGTGTGTT TTTTTCTCCC 
    ACTGCATATA TGGGGAATTG TCAGGCGGTG AATGCGGCAG TGCTGGTTCT 
    ACAACATCCC GGCGGGATTA TCGACCGGTA CTATAGCTCT GTATCCGTCA 
    CCGAGGTCAT GGCTATGTAT CCTGGTCACT ACGTCTCTCT CATCATTCCT 
    TTGTCAGAGG AGGAAGAGAA GAATATTCCA GCGACGGAGA AGGGAGATGA 
    TAAGAAGCAG AGGAAGGCTG TGAGGTTTAC ACGTGTCCAG CTTCTCCGGC 
    CAACGGAGAA TCTTGTGCTC GGTCACGCTT ACCGGCTCAT TACTTCACAA 
    GGTTTCGCCT TTTGCTTTCT TTCTTTTTTT TTCTCCTCGT GTGNGTGATT 
    GGAGTTTATG GTTTTAGATG GTTATNGNAA TTTTACAGAA GTGATGAAGG 
    TGTTACGGGA AAAAAANAGC GCCAAGACNA AAAAACATCN NATTGAGAAN 
    ACAACCNCGG NNAAAAAAGT TCTCGGACAA AAAAGTTCCG GNNAANACAT 
    GGGATTTTGC TAAAANANCT ATCTTTACTC TGGTTTNGAA TNGGGACGNA 
    AAAAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23203919 [Map]; Strand: c
      • AT3G62725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-4081-1 - 3-prime edge 
    GGTTTAATTG ATATTGACGA TTCTGGAAAC AAAATTGGTT TTTGATTACA 
    GGTTTTGTAA TTTTGACGAG GAGGTGGTTA TCTTCTTCTC TTGAGGATGG 
    TCGGAAATGT GAGAGATTGT CAGATTCTGA AGCTTCCGTG TGAGTGTAGA 
    CCATACCTCT GCTGAGTAAG GGCATGTGAA GAACAAGTGG TCGCGCGTTT 
    CCACTAGGTG GTGACAGAGC ACACACGAAG AGTCAGCTCC CACATTCCAA 
    CTTAACATCC GATCTCCCGT AGTTAGACGA TTCTTTATCG CTATCCAAGC 
    TAAAACTGAG TATTTAGGCG TTGCATGTGA AAACCAAACA CCCTTATACC 
    CTTACTGCTC ATTATCGTTA TGCACTTATG ATTTGTTCTA GGGCTGGGGA 
    AAAAAATTGG ATCAGAATAT CTGAACCGAA CCAACCCAAA AAATTGGATT 
    CTAAACACAA CCAAAATTTA GATTTATTTT ATTGGATC

AT1G10530.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60010.1); Has 143 Blast hits to 143 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-41 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR