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13-4085-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 76833 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -1449; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 3600; Region: intergenic
    Flanking Genome Sequence: 13-4085-1 - 5-prime edge 
    CGCAAGTGTG TGGTTTCGCT AAATTCCATA ATACAGGACC ACCATTTTGT 
    GGTAACTTCC CAATTGTTCG TGATAATTAC TAGGTCATAG TGAAATTTAA 
    ATTTATTTAT ATCTGAAATT AGTTTAAGTT TTTGTAAATA TTATGGCTAT 
    CCGGTTTCAC AATATATAGT GTAGACATAG AATATGATTT TTGTAAGTCA 
    AAATCCTATC ACAATAGAAC TTTAAGCAAA TATAGTATAG TTGTTTGCAA 
    CTTTAGTATT TGTATTGAGT TTATTAGAGT GTGGGCTTCC AACCTAAAAC 
    CAATTGGCAA TAGGTGGAGA GGCACATATC TTATATATAC CACTTAAGAT 
    CCTACTCAAC TTCCGATGTG GGACATTGTC CCTAATACGT CCCCTCGAGA 
    TGATGGCTCT TCTAGCCATT GATCTCGATA TGTTTGGGCA TGGATCGGCG 
    GGCCAAGTAT TGGGCCGGAC CGATGTGGAT CGGGTTGAGT ATGTGCGGAT 
    CGGGCTCTGA TACCATATTA GAGTGTGGGC TTCCAACCTA AAACCAATTG 
    GCAATAGGTG AAGAGGCCCA TATCTTATAT ATACCACTTA AGATCCTATT 
    CAACNTTCCG ATGTGGGGAT ATTGTCCCTA ATACGCCCCC TCNANATGAT 
    GGCGCTTCTA GNCATTNATC NCAAATGTTG GGCNTGNATN GGCGGGCCAA 
    GTNTTGGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 76760 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -1376; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 3673; Region: intergenic
    Flanking Genome Sequence: 13-4085-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GGGTAAAAAT AATGATGACA AAATGATATA CATTGGAATG TAGAGAAAGT 
    ATATACAAAT ACTAATAAAT AGAAAAGGGC ATGGAATTGA CGAGGATCGA 
    GGGAAAGTGT GGTGTGGCAG AAATGTTATT AAGTGTGAAA ACAACTGATG 
    AATGAGCCTT TGCTTAATCA CTTCCATGCA CAAGTCCCTT TCCTCTTCCT 
    CTCTCTCCCA CTTCATCGAA CTTTGCGTCC TTTAAAGAAA AGAAAAGAAA 
    AAATATTTTT CATCCAATTG AATT

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR