1. Home
  2. Mutant Lines
  3. 13-4102-1

13-4102-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23372591 [Map]; Strand: c
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: 0; Region: exon1 (5UTR)
      • AT3G63250.2 - [+] show detail - homocysteine methyltransferase 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-4102-1 - 5-prime edge 
    GTGTTTATCG TATGTTTCAC ACAGTACACA GCTTCAGTGG GAGTTGTTGG 
    GTGATCGGTC CGAGGCGACA TACAAGATGA CCGGAAACTC TTTTAACTCG 
    ATGAAAGATT TCCTGAAGCA GACAGGCNGG CTATGCNGGT AATAGACGGA 
    GGGCTTGCAA CGGAGTTCGA GAGACATGGA GCAGATCTCA ACGATCCTCT 
    CTGGAGCGCC AAATGCCTTG TCACCTCTCC TCACCTCATT CACACCGTAA 
    GCAGTAAATC CTTTTCTTCT GTTGTCAGTG AAATCTGAAT CCAACGTCCA 
    GCTGCGGGAC AAGGCCTTGT GCTTTTCTTA TTTTGGGTGT GAATAAACCC 
    TAGGATTTTT AGGTTTACTT TGATTGATTG AGTAAATGCC ATGGGTACTC 
    TAAAGGTGGA TGAAGTAAAG CATTCTCATT TCCATCAATG GTTGGTTGCT 
    CCTTGGACGT TTCAAGCAGA TTTAGAAGAT TACTGATTCA ACTGTTGTTA 
    TTGACAATAT TTAAAGCTGT AAACTTGTGA ACCCTAAACC CCTTTCTAGT 
    GTTCATGTTG CTCCATTGTG TGGTAATATC TACTCATTAT TTGCTATTTC 
    CAGATTCAGT TCCATGGTTT CTTTTGCATT CTGAGTCGGG AAACAGGGTT 
    AAGATTTTGT TTGCTACTCA NTGATCGCTT TGCTATTANA TATGATTGAT 
    G

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23372707 [Map]; Strand: c
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: -25; Region: promoter
      • AT3G63250.2 - [+] show detail - homocysteine methyltransferase 2
        Distance: -91; Region: promoter
    Flanking Genome Sequence: 13-4102-1 - 3-prime edge 
    ATAAACACAA AAAACTGTAG AGAGAAACAC TCAAAATCTT TAGTACTAAT 
    TTTGTTTACA AATTGTAGGT TTAGACCTTT ATCTTGAATA CTAATAACAG 
    TATCGGCCCA ATCCTTTTCT ATGTTTCCTT CAGACCCCTC TTGTAAGTAA 
    GTTTTAACTT CTCTGTTTTT TTCTTATCAG ATTTTGATGA TCAATTTGCA 
    TGTGTGCGTC GTGTATATAT GAAATTCGAA TCAACATCAA AAAATAAAAT 
    AAAGCT

AT3G63250.1

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63250.2

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); FUNCTIONS IN: homocysteine S-methyltransferase activity; INVOLVED IN: methionine biosynthetic process, S-methylmethionine cycle; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR