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13-4103-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3060944 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -8170; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 31; Region: intergenic
    Flanking Genome Sequence: 13-4103-1 - 5-prime edge
    CCTCCGACGA AAGAATCAAG ACAATGGAAT TGTTCCATTG ACTTTTTGTC 
    GACTCCAAAT TTTGACCTTT AAGTACTTTT TTGGGCATTT TCGTGATTTG
    TGCTATATTA CGGACCCAAA ATTACNTTTT TCAAGCATTG TTTTCGAATA
    TTTTTCATGC ATCAAAGCTC GTTAAGACTA GATGGGGTAT CCCTACATGG
    CGGGTGGGAC CCACGGCGAA CGGTTCATCA AGACTTAAAA AAAGAATATA
    TACGATTGCA TTGCATATAC TAACGGATGC GATCATACCA GCACTAATGC
    ACCGGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3054385 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -1611; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 6590; Region: intergenic
    2. Chromosome: 4; Position: 3055879 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -3105; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 5096; Region: intergenic
    3. Chromosome: 4; Position: 3056377 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -3603; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 4598; Region: intergenic
    4. Chromosome: 4; Position: 3056844 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4070; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 4131; Region: intergenic
    5. Chromosome: 4; Position: 3057342 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4568; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3633; Region: intergenic
    6. Chromosome: 4; Position: 3057840 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5066; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3135; Region: intergenic
    7. Chromosome: 4; Position: 3058338 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5564; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2637; Region: intergenic
    8. Chromosome: 4; Position: 3058836 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6062; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2139; Region: intergenic
    9. Chromosome: 4; Position: 3059334 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6560; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1641; Region: intergenic
    10. Chromosome: 4; Position: 3059832 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7058; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1143; Region: intergenic
    11. Chromosome: 4; Position: 3060330 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7556; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 645; Region: intergenic
    12. Chromosome: 4; Position: 3060828 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -8054; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 147; Region: intergenic
    Flanking Genome Sequence: 13-4103-1 - 3-prime edge
    GTCGGAGGGC TCTCTTTTGG CTTTCCGAAA AGGTATCACA TGCCAAGTTT 
    GGTCTCACAG TATAGAAGTT ATAAAGTCAT AAAATTTTAA CCAAAAAAAA
    AAAAAAAAAA ANNGGGGGNC CCCCCCNNGG GCTTCCCCGG GGGCCCCCCC
    NCNNANNNNN NTTNNCCCCN ANCCCCCTTN AANGGGGGGT TTTNNGGGGN
    AANNCCCCCC GGGNCCGNAN CCCCCCNNNN CCTNNNAAA

AT4G06474.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retroelement pol polyprotein
Link
InterPro Scan - TAIR

AT4G06477.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR