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13-4113-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 178206 [Map]; Strand: w
      • AT2G01410.1 - [+] show detail - NHL domain-containing protein
        Distance: -1799; Region: intergenic
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 1899; Region: intergenic
    Flanking Genome Sequence: 13-4113-1 - 3-prime edge 
    TCCGGGGTTG TATGTCTACT TTGTTGTAGT ATCTAATAAT ATGACTCTTT 
    AATCTGTGAG ATGAAATGCT TTGAATTAAT GGATTGAAAC AAAATCAAAA 
    AGCACAATCG ATAAAGATAT AAATCGAATA AAACAATAAA GATGAATTAA 
    TGGGGGTATT GAGAGAGAAA GGTGATGGGC AATGTATGAG GAACCACGAA 
    CACTGGTCTA GTCGTAGGGT CGTTCTCCTT ACATTTAGAT GCAAAGGTCC 
    AAATTACATA ACATGCATAA GATTCACATC TCACGTACGT ATCTATCATT 
    TCCAATTTAA TGTCTTATGG ATAACAAATC CATGCGTGTG TATACAAACT 
    ACAAAACACC AAGTACTAAA GCCTTATATG TCTCGTGTGG TGGCCATAAC 
    ATCGTCTAGT ATATAGAACT TTTGTTTGTT TTAATTTATC ATTCTAATGC 
    ACATACGTAT AATGTTAACT GATGAACTTA TGTCGTTCAA GTTAGATGAG 
    TTTGATTTGT AAATAAGGGA AAAAAGAAGC AAACTTAGGT GCATACGTTT 
    TTATTGTTTA GTAGAATATT TGTAGCCTTA NAATATTACT TTCCTTGAGA 
    TTAGATTANA CTAGTCTCAC ATTTTTGAGG TATAAAATGC TTAATCTTAG 
    TATTTACTTT TTACTGGGTT TGNTACCGGG TCATCACTCA TCANCTTATG 
    GGGNGAATAN ATTGACTATN TNNATC

AT2G01410.1

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT2G16760.1); Has 137 Blast hits to 137 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR