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Mutant Lines
13-4127-1

13-4127-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 11030709 [Map]; Strand: c
  - AT2G25850.4 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25850.3 - [+] show detail - poly(A) polymerase 2
    Distance: -82; Region: promoter
  - AT2G25850.1 - [+] show detail - poly(A) polymerase 2
    Distance: -82; Region: promoter
  - AT2G25850.2 - [+] show detail - poly(A) polymerase 2
    Distance: -1; Region: promoter
  - AT2G25870.1 - [+] show detail - haloacid dehalogenase-like hydrolase family protein
    Distance: -406; Region: promoter
Flanking Genome Sequence: 13-4127-1 - 5-prime edge
```
GCTTCTCCTT CTCTCCCTTC TTTGAACAAG TCAAAATTGA TTTTAATCCG 
TATGATATTT TCCGCTTTCT TTGACTTCCC TTTGAAAATT CCAGTCGAGA 
GCTTCCCTAT CCATCGATTT AGGGTTTCCG ATTTCGTTTT CGAGCTTTTC 
TCGCTCTTCT CTCACTTTTT CTTTCCTCCT TTGGCTCTTT TCTCCTTCTT 
CAATCTCTCT CCCATGACTC TAAAGTCTCC AATTCCTGTT AGATTCCGAA 
ATTATCATGA TCTGGGTGCT TAATCAGATC GAGATATCTA TATTTTGTGC 
TTGAATCGCC TAGGATTTTC TAGTGTTTAC GCGTCTTGTC ATGGTGAGTA 
CTCAACAACG CACGGACGAT GACTCTTCTC AACCGGTAAA AGCT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 11030825 [Map]; Strand: c
  - AT2G25850.4 - [+] show detail - poly(A) polymerase 2
    Distance: -49; Region: promoter
  - AT2G25850.3 - [+] show detail - poly(A) polymerase 2
    Distance: -198; Region: promoter
  - AT2G25850.1 - [+] show detail - poly(A) polymerase 2
    Distance: -198; Region: promoter
  - AT2G25850.2 - [+] show detail - poly(A) polymerase 2
    Distance: -117; Region: promoter
  - AT2G25870.1 - [+] show detail - haloacid dehalogenase-like hydrolase family protein
    Distance: -290; Region: promoter
Flanking Genome Sequence: 13-4127-1 - 3-prime edge
```
GGAGAAGCAA AGGACAATAG TTTTTATTGG TTAAATCGAA TT
```

AT2G25850.1

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6); Has 814 Blast hits to 806 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 214; Plants - 191; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.2

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.10); Has 815 Blast hits to 807 proteins in 221 species: Archae - 0; Bacteria - 15; Metazoa - 260; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.3

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.4

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.9).
Link: InterPro Scan - TAIR

AT2G25870.1

Model type: Protein coding
Short Description: haloacid dehalogenase-like hydrolase family protein
Computational Description: haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
Link: InterPro Scan - TAIR