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13-4188-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3679251 [Map]; Strand: w
      • AT1G11030.1 - [+] show detail - pre-tRNA
        Distance: -403; Region: promoter
      • AT1G11040.1 - [+] show detail - HSP40/DnaJ peptide-binding protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-4188-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC GGCTCATAGG CCATTGATCG TTGTTCTTCA 
    CTCAACTTCT CCGGGAAATT CACTAAAAAC GTTATTCTCA AATCCCCTCG 
    CTTACCTTCT TCTTTAGCAT TTGGCATACC TTGACCTTTT ATCGCCTTCT 
    CAAATCCGTG GAAGATCACA TCTCCCACGG TTATCGACAT TGACTCTCCG 
    CTCAATAGTG GCACCGAGAG TTTGCATCCT GTTAAAGCCT TTAAAAGAGG 
    AATCTCTACC GCAATCTCTA AGTCGTCTCC ACGTCTTTTG AACAAAGGGT 
    GTCTCTTTTC TTCAACCACA AATGTAATAT CTTCAGGTAG ATAGCCCGGT 
    TTTTCGTTCC CTACTCCTTC GAATGTGATC TTCGTCCCTT TCTTCCATCC 
    CGGTTGGATA TTCACTCTTA ACATTTCTTC TTGTTGCATA ATCAATCTGT 
    TAAAAAAGAA CAGAACATAA TGAATGACTC ATTGAGTAAA ATAAGAGAAC 
    GTGAGAGCCA AGAAACAAAC CCTTCATCGG TAATAATGTC TCTTTTGATC 
    TTGATGTTCT TGACTCCACC ATGGCAGAGT TCTTCTAACG TACACTCAAG 
    CTACCANCCC GGGCCGNNGA CCACGCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3679249 [Map]; Strand: w
      • AT1G11030.1 - [+] show detail - pre-tRNA
        Distance: -401; Region: promoter
      • AT1G11040.1 - [+] show detail - HSP40/DnaJ peptide-binding protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-4188-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTAATGAG 
    GTGTTGAAAG ATTGTTCTTG GGCATAAAGG TTTATAATAT GCATATGTGT 
    TTCTTCATGC CTTTCACTTC CTTCATTGTA TATATGTTTC CTACTAGTCG 
    AGTGGGCTTG ATGCGTTAAA GTTGTGATTC GTTGACATTA GGCTTATTTT 
    TATATATTTT CCTTTATATA TACATTTTGT TTTCTTAGAT TGAGCTGTTT 
    TTTCTATGAT TCTTTCTTGC TGTGAATGAT ACAATTGTCT TCTTGTAGTT 
    AACATTGATC AGTATATCGA CAAAGATAAC TATCTGAAAA AATTGACAAT 
    CAACTTAGCT TTAGTAATGC TTACGACTTT TACGAGTTCT TTGGAGTGAA 
    TCCAAAAGAA AACGATGACA CTATATACTA TAATATGCAC TAACATACTA 
    AATGACCGCA TAGCGCAGTG GATTAGCGCG TCTGACTTCG GATCAGAAGG 
    TCGTGGGTTC GACTCCCACT GTGGTCGTAT TTTTGTTATA TTTTTAGGTT 
    TTCGGGGGTT TGTAGGAAAT TTAAGCTGCA ACGACGTACC TATGCTCTCC 
    GTTATCATCT CACTGCTTTC AGAAACTGTA ACTCAAAAAG GAACACTTTT 
    ACACTAATAT CCCTTTTCTC TGGTGAGAGC TTTTTGTGTG ATAACTGAAA 
    CATCANTCGG TATATANACT CTGTTTGTAG ATTTGGGTCT CAATATCTTT 
    AATAGTCACT GAAAACCAGT ANCATTGCAT CN

AT1G11030.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: TCG)
Link
InterPro Scan - TAIR

AT1G11040.1

Model type
Protein coding
Short Description
HSP40/DnaJ peptide-binding protein
Computational Description
HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G44160.1); Has 19507 Blast hits to 13358 proteins in 2831 species: Archae - 102; Bacteria - 8184; Metazoa - 2012; Fungi - 1146; Plants - 786; Viruses - 38; Other Eukaryotes - 7239 (source: NCBI BLink).
Link
InterPro Scan - TAIR