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Mutant Lines
13-4195-1

13-4195-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 30083844 [Map]; Strand: w
- AT1G79970.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 0; Region: exon3 (3UTR)
- AT1G79990.1 - [+] show detail - structural molecules
  Distance: -270; Region: promoter
- AT1G79990.4 - [+] show detail - structural molecules
  Distance: -270; Region: promoter
- AT1G79990.2 - [+] show detail - structural molecules
  Distance: -277; Region: promoter

GAAAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
CATCCTACTT TCATCCCTTT ATTATCAATT GTTTTAGTGG CTCACGTTGC 
TGAATAAAAA TGGATATTAT CGATAGGGCA TCTTTTATTC TATTTTGGGA 
TACAAGAATG ATTGAAACAC AATATTGGAA AGAAAAGCTA AGTTGCAAAA 
AAAAAANAAA ANGGAAAAAA AGTCGACCNC AGGGGGAGTC NAACCCNCNA 
CCTTTTGATC CNAAGTCAAA CCCCCTAATC CACTGCCCTN TGCGGNCATT 
CTNGTTACTT ATNTCATGAA CAACATGGTA AGCCCAAACT TCTTCTTTCC 
TCTTTCTTNT TTCTGTTTTC NGGNCGCTCG TTNCCNCCAA AACCTCGTCN 
AGGTTTNTNT NTNTNTNAAA AAGNGCTTTT GCTGCGTTTC CATNCNCTCG 
GAAGGAACTN GGCTGAATCG TNGGAAAATT ATCNATCTGG CGTCGTNGGG 
GCATNTTTAN CTGCCCCAAT TCNTGGGATA ACNANCCCGG GCCGNNNACC 
NCCCGNGCCC TATAGGNNNT NNNNNNNNNG GGNNNNNNNC NNNCCNNCCC 
C

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 30083844 [Map]; Strand: w
  - AT1G79970.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: 0; Region: exon3 (3UTR)
  - AT1G79990.1 - [+] show detail - structural molecules
    Distance: -270; Region: promoter
  - AT1G79990.4 - [+] show detail - structural molecules
    Distance: -270; Region: promoter
  - AT1G79990.2 - [+] show detail - structural molecules
    Distance: -277; Region: promoter
Flanking Genome Sequence: 13-4195-1 - 3-prime edge
```
TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCA 
TATAGAGAGA AAACACAAGT GTGTCCATCA AATGAGGATC AGTAGTAACA 
ACGCAATCAT ACAAAGTAAG AAGAAAAAAA AANCAANACN AAAAAANGGG 
NTGANCCGGG GCTTNAGGCC NCAGCAAANC TCNCCCNANT NAAAGNT
```

AT1G79970.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79990.1

Model type: Protein coding
Short Description: structural molecules
Computational Description: structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79990.2

Model type: Protein coding
Short Description: structural molecules
Computational Description: structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79990.4

Model type: Protein coding
Short Description: structural molecules
Computational Description: structural molecules; LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein SYS1 (InterPro:IPR016973), Integral membrane protein SYS1-related (InterPro:IPR019185); Has 294 Blast hits to 294 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 83; Plants - 40; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link: InterPro Scan - TAIR