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13-4256-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26743595 [Map]; Strand: w
      • AT1G70940.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4256-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACACGAAGAC 
    TCTTCCTGGA GTCCAGTGTA TCATCTGGTA CACGCTTCTC CTTTTTCTCT 
    TCGAGTTTCG TGGCGCCAAG ATGCTCATCA TGGAGCAGTT CCCTGAGACG 
    GCTGCTTCCA TTGTTTCTTT CAAAGTCGAA TCCGACGTCG TTTCGCTCGA 
    CGGCCATGAT TTTCTTGAGA CCGATGCAGA GATAGGTGAC GACGGGAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16651953 [Map]; Strand: w
      • AT5G41630.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 118; Region: intergenic
      • AT5G41640.1 - [+] show detail - Protein of unknown function (DUF626)
        Distance: 1384; Region: intergenic
    Flanking Genome Sequence: 13-4256-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGG 
    TATGAGAATC TCAAGTTTCT TGAACACTTT CATCACATCT TCATCGTTTG 
    ATGTATAGTA GCACAAAATC ACTTGCTCAA GATTCGGCAT TTTCTCTATG 
    AAGTATTCGA CATGCTCTAT CTGCTCCCTT AAACAATAAA CAAATTCCTC 
    ATCTTCATCA TCTTCATCTT CGTCGTCGTC CTCATCGTCC TCATGTACAT 
    CGCAAATTTC ACCAAAGTTC AAAATCTTTA GAACCTTGAC CGGACTTGAT 
    GATAGGCAAG GACGAGCAAC CACTCCCCCC ACAAAATTAG TAGGATATCT 
    ACATAAGCAC CCGTCTTCGT CCTCGCATCT ATCTGAATAT ATGTGATGCA 
    TTCCCTGAAA CATAAAAGGA AACAGTTTCA TAATCTATGT GTTTTGAAAA 
    ACGTGGTATG GTTGATTGAA AAGGATTGTG TATGTATAGT ACTTCGAAGA 
    TAAGAGTTAC TAGATTTGGA CAATTGTTGA GCATAGCTGG CAATGGTTTC 
    CATATTATAT GTGGTTTAGT CTGAATAGTT AATTCAATGA GATTGCTGAA 
    TACTGGTATT GTATCACGGC AGCAGCCAAA TACCTAAAAA CCAAAAAAAA 
    CAAATCAAGT CAAGCATGTA ATCATTGTTG GTCTAATAAC ATAAACAAGA 
    CTAATTAATT AATCAATATC CAGTTGGGAC TGACCTCAAG AGTTTCATCA 
    GACAAGTAGA NGATCTTGAC ATTG

AT1G70940.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.
Computational Description
PIN-FORMED 3 (PIN3); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G23080.1); Has 1983 Blast hits to 1757 proteins in 550 species: Archae - 37; Bacteria - 1198; Metazoa - 14; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41630.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G41840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41640.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF626)
Computational Description
Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24388.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR