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13-4272-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 153241 [Map]; Strand: c
      • AT1G01410.1 - [+] show detail - pumilio 22
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4272-1 - 3-prime edge 
    GCCATATCAC GTACCGTCAC TTGTTGGTCT TGTCGAGTGA CGAAAACGGT 
    TGCAGTCATA CTCAAGAAAG TTATAACAAT AGCTGATGAT TTCTTGAAAG 
    ATGAATT

AT1G01410.1

Model type
Protein coding
Short Description
pumilio 22
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 22 (PUM22); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G64490.1); Has 304 Blast hits to 271 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 65; Plants - 186; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR