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13-4306-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26497743 [Map]; Strand: w
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: -66; Region: promoter
    Flanking Genome Sequence: 13-4306-1 - 5-prime edge 
    GGGAGGAAGG AGCGGTGGCG AGAAGAAGAA GAAGAAGAAG AAGAAAGAGA 
    TTAAAGATTA AAGAAAAGGG TCAAGAAGAG ATGGTTATGT GAGTTTGGTA 
    AAGCATTCAA TTTGGTAATC TCAGCCTCTC CCTTGGCTAC TAAAAACTCC 
    TCTTTTTCTT ATCTCTAGAA GAAACGCTTT TTACTCTCTC TCTTTCTTTC 
    TTTTAAAACA TAAAAAAGGG CAACCAAAAA AAAAGTGTTT TTTTTTTAAA 
    ANNGNAAATA CCCGGNCAAT AAATNTNTAA NTTTTNTNTT TCAGNAAAAA 
    AAANCGGCCC TGTNCANTTN CANAAANAAA ANAAAATNTT CNTCAGNCNT 
    CNTCAAANTT TTTTTTTCNT AAAGCTACCA CCCCGGNCCG NCAACCNCCC 
    NNNCCNTNTN GGGANNNNNN TNNNNNNNGN NGGGGNGNNN TNNNANCCCC 
    CCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26497627 [Map]; Strand: w
      • AT5G66320.1 - [+] show detail - GATA transcription factor 5
        Distance: 0; Region: intron1 (5UTR)
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-4306-1 - 3-prime edge 
    TTCCTCCCTC CTTCTCTCTG TATCAGGTAC TTTTTCCTAA TTCCTGTCCA 
    ATTTTAGGGT TTTCTTTTAA GGGTTTCGTA TGTCTCTTTT CATGTTCTTT 
    GAATTTGCTT CGTTCGTTGC AGTTTTCATT TCAGTCTCGT GACTTGACTC 
    TGTTTGTGGG TCGTTTTCGT AATTGAGTTT CCCCGGTCGT CTGTTTTTTT 
    TGGGGTTCGT GATTTCTTTT TTATTCCTTC TCTCTCTCTT GGAATTGCGA 
    AAAAGAGGAA CGTTTTTTTT TACGTTTCGT TTGAAAAAAA ATGTGAATAA 
    ATNGGACATA AGTATTGAAT T

AT5G66320.1

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66320.2

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR