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Mutant Lines
13-4314-1

13-4314-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 1936406 [Map]; Strand: c
- AT5G06330.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
  Distance: -762; Region: promoter
- AT5G06340.1 - [+] show detail - nudix hydrolase homolog 27
  Distance: 0; Region: exon1 (5UTR)

TTCACGGCCA TGGCGCACGA CGGCAACTTC TTAGGCGGCT GCCTCTCCTT 
CGTCCGGCTC AGAACAATCG GTGATTGGTT TCAATTTTCT CACTAGTGAT 
AAAATATATT ATTACGACAC TACCCTTACC CGCTTAGACA TTAAACGATA 
TCGTCAGATC CCTAGGGTCA AAACTACGAT AAAAAAAAGA GAAGTCAACG 
TGAATGCTTG TATTGGGCCC ATTTCTCCCT TAACTCGTAA CCCAAAAGGC 
CATTGAGCTA TTGTCCCAAA TAAAAGCCCA ATTAATTATA ACAAGAAAAC 
GTAGAATTTA AATGATTGAC ACTTGCAAAT AATATATTCC AAAAGTAACT 
TAAGGAAATA AAATGAACTC ATACATTACT AAAAAATGCT TAAATTTATA 
AATGTTCTGA TCTTCGCAAT ACTTAAAAAG TCACTTTTTC ATGATTATGC 
AACATAAAAT TTAACGGCAA ATCAATATAT ATAATATCAC AACGAGTTAA 
TACTTAATAC AGAAACAAAT CAAATACAAC CATTATCACA AATTATATCA 
TTTTTGATCT TATGATATTA GTTACCAAAA AAAAAAAAAG TNNGCCCANC 
ATNAATAACC CCATTTTACT NTAANTTNTT TACCAANCAC CCCCANANGT 
TTTCGNAANA ATNCNTNNCN AAAANTTTTT NNTTANAGNC CCATNC

3 prime edge [+] show sequence

Chromosome: 5; Position: 1936522 [Map]; Strand: c
- AT5G06330.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
  Distance: -878; Region: promoter
- AT5G06340.1 - [+] show detail - nudix hydrolase homolog 27
  Distance: 0; Region: exon1 (CDS)

GCCGTGAAGG CTTCTGGATT CATTGGGAAA TCAGCAATCT CTGTTCATCT 
AGATTTCTCT TCGTTTCCTG TGAAATTTTC ATGCTTGAAA CAGTTTTCTG 
TATCTTCACC AAAGCCACTG GTCGTTTTAT CCGTTGCCTT ATCGTCGCCG 
GCAAGAACAG TTAAGTCTCC GCCTGTTGGT TACCGGAAGA ATGTTGGGAT 
TTGTCTCGTT AGCCCATGTA GAAAGGTAAC TTCTTTCTTC TTCTCCTTCC 
TCTCTCATCG CTTTATGTGA TTTGGAAGAA TTTGTCCACT TGATTTGGAT 
TTGAAATGGT TTTGGTTTTG CAGATTTTTA CGGCGTCAAA GATTCACATT 
CCGGATACAT GGCAGATGCC TCAGGTGAAT CTCTCATAAG CTCTATTTTA 
TTACAAAATG GGTTTATTAT ATAGGCTTTC GGTGTCTAAG TAGTTTTGAT 
TGCTTTGGAG AGCTTAGTTC TCACTTCTCA CCAAAACAAC AGCTCCTTTG 
TAGTGTATTG AGTGATATCG TTTTTACCTT TGTTGCTAAA GAGGTGTTGA 
ATTGCATAGT TTAGGGAATT GTTCATTTGA AATTACAAAG TAAAAACCAA 
ATGCATTGAC AATCCTGAGA AGTAGCTTAN GCTGTANATT CACCAGTTTA 
TGATCCTTTA GGGTATCAAT TTTGGCCATA GGTTTTTATT AAATCTGCTT 
TTACAGGGGG GNGCTGNTG

AT5G06330.1

Model type: Protein coding
Short Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 1 (TAIR:AT3G11660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06340.1

Model type: Protein coding
Short Description: nudix hydrolase homolog 27
Computational Description: nudix hydrolase homolog 27 (NUDX27); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 26 (TAIR:AT3G10620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR