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13-4395-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Flowering & Growth::slow growth)
seedling (PO:0008037)
  • abnormal (PATO:0000460)
    (Seedling::abnormal shape)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3692441 [Map]; Strand: c
      • AT1G11070.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein ...
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-4395-1 - 5-prime edge 
    CNTGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCA TCTTGTAGTG GAAAAGGTGT TAGCTGCATT 
    AGATGGACTG ATTAAGGGGA TGAACGAGAG GCTTAATACG ACAGAGAACG 
    GCAATGTGGA AATGAAGAAA AAGGTTAGTC CGCGGAGTAC TAAAACATCA 
    AATGACCGAT CAGAATCATT GGCGAAGCAA CCGATCAGGC CAAAAACGGT 
    GCTGAGTCCA CCGAGTAAAG TCCATGGAGA CTTTTCAATC TCTGTGTCAA 
    ATCTTCCTAG AAATGTGAGA ATGCAAGCGC TTGTAAAGCT GAGTCCTATC 
    GATGTAAAGC GACTCGCTAT CCAAAATTTT AGTCAGAAAG AAGCTCTGAG 
    CAATAATGGT GATGGTGATG ATGAGAGTCT CAAAGTGAAG AAGAGTGAAA 
    CAGAGGAGAA AGCAAAAGAA GCTATTCTTG AGAAACAAGA TAGTGTGAAG 
    AGTCAGATTG ATGATAAAGA TTGCTCAAAA GTTTCAGTGA AATCTGAAAT 
    GGTTTCAAAA TCTTTTGCTC CGCCTCCTCC ACCACCTCCA GGGAATGCAG 
    CAATCCCGGT GGAACCACCA CTNACAATGT CTGCTGAAAA AGAGTCGTAT 
    TGCTCCGCTT NCTCCACCTC CCGGAAGAGC AGNACTACCC ACCGGCCACC 
    GGGCNNTTTN CAATGGCCTG TGNAAAAAAG GAGTGGCTTG TTCCGCCTNT 
    TACCCNTCCA GGNNTGNANC CCTACTTCCC CNACCGACAC ANNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3692440 [Map]; Strand: c
      • AT1G11070.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein ...
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-4395-1 - 3-prime edge 
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    CCAACTGAAT GCATAGAGAT TTTGTTACAA TAATGTTGTG ATATATAATA 
    TTTAATATTA ATATTAATCA TTAAGACTTT GATATATGTT ACCAAGTCGA 
    TCAGACAGAT TCTTCCTTAT GTTACTGCTT CTATACTTTG GATTTGATGA 
    TCCATTCGTG GTCATCGATC CATGAATCTC CAATTGATTT CAAAGCGTTG 
    TAGAAATTGT CAAGCAACNT GTTTGCAATA GTTTTGATCA GAATAAACAA 
    ATTATCACAA TTTGGATTTA AGTTATGAGA GGAATTTGTA TAAACCTTGT 
    CAACTTCTTC ACGTCTCATT TCGAGGATTT GGGAGCTGTC AATGATCTCA 
    GGACAGAGCT TATGGAGATC TTTCATCGTA CGCATCACCA TCTACCATTG 
    ATCCAGAAAA CAAACAACAA CGCCACAAAT CAGTCATATC TAACACACAA 
    ATCAAGTGGT GCGTTTTTTT TTTTANCCAN GGAATNGATT TNCNCGGGNT 
    TCNCCTNTTG NANNNCNGNT TNTAAACTGG NANANNTTTT TTTTNGNAAN 
    NNCCNNNANA AAANTTNNCN NNGTTNNAAN TTNTTTNAAA TNTTTNATNN 
    NTTANGGCAA AAAANATTTT TTNCAANTTT TNNTAATTGG GAAANTNCNA 
    ATNCNTTTTG CCCCTNNNAA AACTAAANAA AAAATTNCNC TNNGGGGANA 
    NNCGGGNNNG NTTTTNTNGG GNNCNAAAAN CCCNATTTTN TTNNAAGAAA 
    AANAA

AT1G11070.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in 152 species: Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR