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13-4428-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2563065 [Map]; Strand: c
      • AT1G08165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -917; Region: promoter
      • AT1G08170.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4428-1 - 5-prime edge 
    CATGGGAGAT ATGTTCGAGA GGATAGCGCA GGAGGCAGCG AGGTTAAGCG 
    ATTATACAAA GCGGAGGACG TTGTCTTCGA GGGAGATCGA AGCAGCGGTT 
    AGGTTGGTTC TGCCTGGTGA ACTTAGCCGC CACGCNTGTC GCTGAAGGCT 
    CTAAAGCTGT TAGTAACTTC GTTGGTTATG ATAGTAGGAA ACGTTAGTTG 
    GTTTTCATTC CCTAATCGTT GTATCTTTTT TCGTGTAATG TTTTTTTCAA 
    CTTGACTGTT AGTGTAAGGT TTAACTTAGA GAGTATGGTT TCTATAGTTA 
    TGTGATTATT TCGTTTTATG TTCTATACAT GTTCTGTANA ATATATGTTA 
    TGTTGTTGAA AATGGAGATG GACTTGATCA TTTGAATAGT GGTTTATTTA 
    GCTTTCATAT TTTTTTTCTC TTGCATTTGT TGTGTTGCTA AAATTAGTGA 
    CATCCACTAG AGTATAATAT TCTTAAACAC TAGGTGACCT TGTGTGTGTT 
    TGTAGAAACA GAGCTATTGA CAAGTGATGC ANAAAAAGGG AAAAGATAAT 
    GGGAACTATG GAAAAGGTAA AAGTAAAAAG TNCTCNCTAC ATGCTGAGCN 
    TTGAANTTGG NCNCCNCATA TTGAAAGATC CTTTNTNCTT NCCTTNTNCN 
    NNANAAACTN TNCNTNTNTN GATNNCNCNC NTNAAANCNN NTCCGGTTTN 
    NNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2563181 [Map]; Strand: c
      • AT1G08170.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4428-1 - 3-prime edge 
    CTCCCATGAA CATGTTCACC ACCGTCATCG CCTTCGACGT TATACCTAAA 
    TCCGGATGCA CTTGCTTCAT CACCTTATAC ACATATCTCC TATACTCATC 
    TCCCGCCAAA TCGTCTCTCT TCTTCTTTTT CTTCTTCTTC TTATTCTCCT 
    GCTTCTTCTC AACCTTATCT GTTTTCTTCA AAGTGCCTTC ACTCTTGGAA 
    GCGGGAGTTT CCGGTGGCTG AGGTGAAGGT TCATCTCGAA CCTCCACCGG 
    AGTCTCCGGC GGCTGAGGTG AACTTTCATC TCGATCATCC ACCGGAATCT 
    TAACGGTGGT AACGTTTTCT CCGACGGGAA GTGACCGTTC GTCTGGAACC 
    TCCACTGGAA TCTCAACGGT AGTAACGTTT TCTCCGACGG GAATGGAGAA 
    AGTGAGATCT TGCGTCTCTT GATCGTTCGC TGTCTCGGTG ATCACACACG 
    GATCTCCTTC TTCCGTGACG GTTACTTTGA TTGTCTCTTC CACTACTTTC 
    TTCTTCTTCG TCACGGAAAC AACCTTTGGT TTTCTCGGCG CCATTTTCTT 
    CGTTAGAAAT AACCGAAAAT GTTATGTGGT TAAGATTTAA AAAGGGCGTT 
    TTGGGATGGG TCGTAACAGT ACTTCTGCGA TTGACATGTG GTGCCACGTG 
    TCGTTCGAAT ACCTTAGCAT TGGTGATTAA CTGTCTACTA CGCCGGNGGT 
    TATAAAAACT AAAAAGTAAG AA

AT1G08165.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08170.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G28720.1); Has 3412 Blast hits to 3396 proteins in 350 species: Archae - 0; Bacteria - 51; Metazoa - 2306; Fungi - 230; Plants - 467; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Link
InterPro Scan - TAIR