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13-4429-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19663062 [Map]; Strand: w
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -445; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-4429-1 - 5-prime edge
    CCCGCCGGAA TCTCCTCTCC CTTCCTCATC CTCTGCTCTC GGTAAAGACT 
    TGAAAAAGGT CCGCCTTTTT TCTATATCAT TTACGATTTT TCTGTTGAAA
    CCATAGGAAG ACATGAAAAT GAAAATGCAC CATGTTAGAT TGGTCTCTAG
    TGCTTGAACC TGTTGAAAGA GTTGCTCAAG CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662946 [Map]; Strand: w
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -329; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4429-1 - 3-prime edge
    CCGGCGGGTC GTCCTTGGGT TCTAATCCGT CAGAGGTGGC GAAAATACGG 
    AAGGTGGATC TTCTTCTATG GCGAAAGCCA TAAGTGAGAG CTATGGAAGA
    GGAGACCCCA TGGGTGCTGC AGAGAGACCA ACTCATTCTC TCCTCCAATA
    ATCGCGATAA GGAAGAAGAA ACTTGTTGGC TTTATTGAAC CGGTCCAATT
    CTCAACCGAA CTCCGGTATT CCAAATTAAA AGCCAGCAAT CAATAATTGA
    ATCTCGAGCC CACGACGGTT TGATTGGTTT AGCCATTTCT CGGCGCTAAA
    TATAATTTAT TAAAATGATG ATTATTGCGA GAAGAAAAGA TCTTTCTTTG
    ATTTTTGCTT GTGGATTTGG ATTTCCAGTT TCCAATTCTC TCAAATTTGC
    AATCCACCTT CAAATTCACA CACATCTTCA ACAGCTACCT TTTCGGGAAC
    TTGCTAGAAT T

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR