1. Home
  2. Mutant Lines
  3. 13-4435-1

13-4435-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29940790 [Map]; Strand: c
      • AT1G79570.1 - [+] show detail - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
        Distance: -1934; Region: intergenic
      • AT1G79580.2 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: 60; Region: intergenic
    Flanking Genome Sequence: 13-4435-1 - 5-prime edge 
    CTCCGAAGAC TAATACCTCA TCATCACAAA GGTGCTTGAA GGTTCAATTT 
    CGTTTCCACC ATCATTTTGC ACTTCAGAAT ATAATTTTTG TTCAGCAAAA 
    TCTCACAAAC TAGTGTTCAA TTCAGATAAA CCGATCTGAA GCGAACATAA 
    TTAATCTGGA TTTCGAATAA GTGAAAATAA ATATTCATGC CTAGAAGATG 
    CCATAGAATA ATGTGGTGGA CGATAGAAAA AGAAATACTT TTGATTAAAA 
    AGATAGAAGA AGAATCACAC ACTTTAAAGT AGAAGAAGAA GCAACTAGTA 
    TAACTTTGGT TTCATAATTA AAGCCCAATT GAAAGAAAAT GAAATTTCGT 
    TTTTTCTATT GAATCTTTTT GTCTTAAAAT AAAGAAATAT AACCGACTCC 
    AACGGCTTTA TTGTAATCTC TCTATACAAC ATGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29940906 [Map]; Strand: c
      • AT1G79580.2 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: 0; Region: exon4 (3UTR)
      • AT1G79580.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 13-4435-1 - 3-prime edge 
    CTTCGGAGAA ACAGAACAGA ATATCGTAAA TGTAAGACAG AATTATAAAA 
    AACAAAAAAA CAAACAGATT CCTCGAACTG TGAGTTGGTT GCTGTGTCAA 
    GTTCGCACAG CTAAAAAAGA GAGAGAATAA AATCGAAAAA CATGAGATTC 
    AACAAATCCG ATTGATCTAC TTTGGGAACT TGAGAAGATT AGCGTCGTTT 
    CCCAAGTAGT GAAACGGAAA CCTTTGATTA ACTGGAGATG AAGAAGAACC 
    ACCATTGTTG TTACCCAAAT GATCAGCCTG ATCGTTATTA TCGTTGTTAC 
    TCAAGTCACC AAAACATTTT GCTTGATGGT TCTGCACTTG CTGCTGCTGT 
    TGCTGATTCA TGTTGCCTGT AGTGAGAAGC T

AT1G79570.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
Computational Description
Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G16270.2); Has 118967 Blast hits to 117429 proteins in 4809 species: Archae - 112; Bacteria - 12197; Metazoa - 45923; Fungi - 10276; Plants - 32353; Viruses - 463; Other Eukaryotes - 17643 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79580.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator Summary
NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.
Computational Description
SOMBRERO (SMB); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 70 (TAIR:AT4G10350.1); Has 5042 Blast hits to 4339 proteins in 312 species: Archae - 0; Bacteria - 299; Metazoa - 1017; Fungi - 76; Plants - 3059; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79580.2

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator Summary
NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.
Computational Description
SOMBRERO (SMB); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 70 (TAIR:AT4G10350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR