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13-4520-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 110707 [Map]; Strand: w
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -2096; Region: intergenic
      • AT2G01190.1 - [+] show detail - Octicosapeptide/Phox/Bem1p family protein
        Distance: -4268; Region: intergenic
    Flanking Genome Sequence: 13-4520-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CAAACATAAA CCAAATCACG ATCAAACGAG 
    AAGGTTGATT ATATTCATCC TAATGGTCGA ACAAACCCCT TCGTACTCAC 
    CAAAGTTAAA TGACGTTCTC GGTTCTCATA AGAACAATCC TTCTCTAACA 
    ACATTACCTG TTGATGTATC CAAGATTATG TATGTCTCGT ACATGTTTTA 
    TAGTTTACTA ATTATTGATC AAACAAAAAC ATGTTGCGGA ACAATGTCAA 
    CTTTTGGAAT TTCCAATCTC CCATCTTTGT CAAAAACAAC CTCTTTTGGA 
    TGCATCTTAT CGTGTTCCTT TGTATGAAAT TAATTAATGA AAACGTTAGC 
    TTTTGAAAGG GACTTTACTT ACTTTATCTC AATTTATGCT TATCAATTTT 
    TATATCTATT TTTTTTTAAA NGTCGNAATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 110707 [Map]; Strand: w
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -2096; Region: intergenic
      • AT2G01190.1 - [+] show detail - Octicosapeptide/Phox/Bem1p family protein
        Distance: -4268; Region: intergenic
    Flanking Genome Sequence: 13-4520-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    TTTGTCGATC TCATATTATA CAGAAACACG ATTAAAAGGA GATTTCAAGA 
    AAAGCCCTTA TAATAAGAAC TCTATGAAAC CTAAGTTATA AGAAGAGGTG 
    ACTTGACTAC ATTTTATGGT TGGGAATGAA ATTCGAAGAT CTAGCNTGTT 
    GGAAAGACAG GCGTAAAGTT TGTGTAATGT ATAAACAGAA TCTCTTTTGT 
    ACGAAAGACC ATTCTACAGA ATTGACGTGT TAATGTGTAT ATCTGGAATT 
    AGGTATTAAA CATTAATTTT GAGTTTGTAT ATCTTCTCTC TTTTTCTTAC 
    GATCAATATG CAAATTAGCA AATAGAGAGA CGTAATGATG ATGTTTGTGC 
    ATTACCGAGT GAGATAACTA AATGATGTTT CATCATGAGT ATTGCAAAGT 
    AAACAAAGGG GCGGAACAAT AGAGAGACAA CATCTGTTTT TTGATTGTGA 
    GTTTGCAAGG GAGGTTTGGA TCTATTTCAC TTCTCGGGCC CATGTTTTTC 
    CTCCTCTTTT GTTTGAAGAT GGAATTAGAT GGCTAAAGAA TCCTTGTCAG 
    GACAAGAATG TGACGACGAT TCTTAGGCTT GCCCATCATG CATCGGTGTA 
    CACGATCTGG AAAGAACGAA ATGCTCGACT TCACGCTTCG GCTTCAAGAC 
    CTGCAGCTGC TCTGATTTTG GAGATTAAGT CAGTTATTCN GGTGTCACTT 
    GGATC

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01190.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p family protein
Computational Description
Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
Link
InterPro Scan - TAIR