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13-4530-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21474229 [Map]; Strand: w
      • AT1G58037.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G58037.2 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4530-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAG TGGTCTTCGA CAAAAATGAC AGTTACCATC 
    TGTATAGTCA ATTGTCTCGG CCAAGACTTT CTTGAGAGGA TGTTTGGAGT 
    GACGCGGATG GTTGATGATG TCTGGCTGGA TGATGCATTC GAAATGTGCG 
    CNGGAATTTG CAGATTTTAC AGTAAATGGC GTTGCCTTCC GTGTCACCAC 
    ATCCATCGCA TGGAAGATAC TCATGGGGGT CTCCACTTCC AGTATGCATC 
    AGCCACCAGG AAACTAACGG ATGACTGCAG GGAATCTTCA CTCTAGGTAT 
    ACGAGATATT TCGTACTCGT ACATGTCCAT ATTTGGTCTC GGATCGTTTT 
    ATGTTTGTTA GGTGAATACC AAAAAACACA AGTTTGTATT TTTCTCANAC 
    TTCCTTTGGT AACTCGGACT CCTTTTATGT ATTTAGGTCA TACACGAATA 
    ATGTAACCAG TGACCTGATG CCAGGTCATA TACTACTTTA ATATTACCTA 
    ATTTCTCTTG ATTGATGATA CTCATTGACC TTACCGACAC TACCAGCTCA 
    TCCTCACATA TCTCAATACA GTTAACAGTT TCATAGACCC TTTTTTATTA 
    NTCTAGCTAT AGCTGGTTAT TTTTTTTCTC CTAAGGGACA GCTGANCTAA 
    CGGCAATCAT TTTACTATTT TANAGTTGGA TCTTATGCGG GGNGCAANAA 
    CGNGGCTTGA ATCTTTCCAT TANNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21355671 [Map]; Strand: c
      • AT1G57660.1 - [+] show detail - Translation protein SH3-like family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4530-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTATTCAG 
    TTTATTACCA ACCTCGAGTT CAACAACTAT TGGGTAAAGC CTAAACCGGG 
    TATGCCTCAC AAGTTCTACC ATGGTCAGTA CTGGTCGCAT CTGGAATGTC 
    ACTAAGCAGT GCCAGTTGGT GTGGAAGTCA ACAAACAGGT TTTGATTACT 
    CAAATCTCTA ATCTGTTTGG AAAAGTTTTG ATTGTTAAAA TTAGCGTTTG 
    AATGTGATTT TGATTCTTTG ATTTGGGGTT GAATT

AT1G57660.1

Model type
Protein coding
Short Description
Translation protein SH3-like family protein
Computational Description
Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: guard cell, juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57860.1); Has 1438 Blast hits to 1438 proteins in 382 species: Archae - 215; Bacteria - 0; Metazoa - 706; Fungi - 180; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G58037.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G45730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G58037.2

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G45730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR