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13-4541-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4121321 [Map]; Strand: c
      • AT1G12140.1 - [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 5
        Distance: -48; Region: promoter
      • AT1G12140.2 - [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 5
        Distance: -48; Region: promoter
    Flanking Genome Sequence: 13-4541-1 - 5-prime edge 
    GTGCCATCTT TTTTGTGTGA TGATGATGCT CTGTTCTCAA AATTGGGTTT 
    ATATAGGAAC GTCTTCGGTT CGGATTAACC GGTTCGGTCT AAAAAAAATC 
    AATTTTTTAG TCTTAATTAA GAAATGAAAT TAAAACCCAA CTAAAAACGA 
    GTGTTAGCAA TTTAATGACA TGGAGATACG CAACAAAGAG AACAAAAAAG 
    AACAGAAAAT GAAACATTAA CGTGTTGCAA CAATTATGCT GTAATTGACT 
    AAATCGAGAT CTTATTTGAG TGTTCATATA TTCTTTTTTG ATAAAGAATA 
    TTTATTTTAA ATAAAGTAGT GCTAATATAT TCTCCAAATA CATAAAGGAT 
    ATTACATAAG TCAAACTTTG CCAATCACCC TTAGATTGGA ATTGGAACCA 
    ACCGAAGACA TTTTCATTTT ATTTTTTGGA CTGCAAAAAA GTTTTTTCAA 
    CCTTTATTCA TTTCAACATG GGAATATCAA CTCTTGGATC TTCGAAGTGC 
    ATTTTCTTTG GAAAGATTGG TTTATGTAGA CCAAACTTTG TTCGGTATGA 
    ATTTAGCAAA ATCCCGGTAC GCTTCTTGTA TAATTNGATC ATCATCATCC 
    CATTCATCAC GAAAATTGTC ATCATCTTTT TTGATGGCTA TGTTATACTG 
    TTCCTCTCTC CAACGTTCGA TGGACGAGCA CCACATTGTT CCGCAATCCA 
    GT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4121406 [Map]; Strand: c
      • AT1G12140.1 - [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 5
        Distance: 0; Region: exon1 (CDS)
      • AT1G12140.2 - [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4541-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAAACC 
    CGAGTCAACT CACTCAACGT GGCAGTGATC GGAGCCGGAG CCGCCGGACT 
    CGTAGCTGCA AGAGAGCTCC GCCGCGAGAA TCACACCGTC GTCGTTTTCG 
    AACGTGACTC AAAAGTCGGA GGTCTCTGGG TATACACACC TAACAGCGAA 
    CCAGACCCGC TTAGCCTCGA TCCAAACCGA ACCATCGTCC ATTCAAGCGT 
    CTATGATTCT CTCCGAACCA ATCTCCCACG AGAGTGCATG GGTTACAGAG 
    ACTTCCCCTT CGTGCCTCGA CCTGAAGATG ACGAATCAAG AGACTCGAGA 
    AGGTACCCTA GTCACAGAGA AGTTCTTGCT TACCTTGAAG ACTTCGCTAG 
    AGAATT

AT1G12140.1

Model type
Protein coding
Short Description
flavin-monooxygenase glucosinolate S-oxygenase 5
Curator Summary
belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
Computational Description
flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5); FUNCTIONS IN: monooxygenase activity, 8-methylthiopropyl glucosinolate S-oxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1); Has 12586 Blast hits to 12018 proteins in 1454 species: Archae - 35; Bacteria - 5986; Metazoa - 1231; Fungi - 1610; Plants - 812; Viruses - 0; Other Eukaryotes - 2912 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12140.2

Model type
Protein coding
Short Description
flavin-monooxygenase glucosinolate S-oxygenase 5
Curator Summary
belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
Computational Description
flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5); CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1); Has 11380 Blast hits to 10828 proteins in 1431 species: Archae - 28; Bacteria - 5328; Metazoa - 1193; Fungi - 1290; Plants - 802; Viruses - 0; Other Eukaryotes - 2739 (source: NCBI BLink).
Link
InterPro Scan - TAIR