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13-4594-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3681560 [Map]; Strand: c
      • AT1G11040.1 - [+] show detail - HSP40/DnaJ peptide-binding protein
        Distance: -636; Region: promoter
      • AT1G11050.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -328; Region: promoter
    Flanking Genome Sequence: 13-4594-1 - 5-prime edge 
    TTAAATGTGG GAAAATTGAA AAAGCAAAAT TAATAGATAG TACTAGGATT 
    AATAAAATTT TGACAAAATT AATCAAAAAT TCAGACGGTA AGACAAAAGA 
    GAAAACTGAA TAAAGGTCAA CTAGAGATAT CATTTTAAAC AATCGACTAA 
    ATTATCAAAT TAGACTCTTT ACGTGTAAAG TTGTTATTAT TGCTTGCTGA 
    TGGGAATGGG GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3988253 [Map]; Strand: w
      • AT1G11800.1 - [+] show detail - endonuclease/exonuclease/phosphatase family protein
        Distance: -963; Region: promoter
      • AT1G11803.1 - [+] show detail - pseudogene, auxin responsive protein, blastp match of 74% identity and 1.2e-1...
        Distance: -223; Region: promoter
      • AT1G11806.1 - [+] show detail - pseudogene, hypothetical protein, likely a tandem duplication of the immediat...
        Distance: -93; Region: promoter
    Flanking Genome Sequence: 13-4594-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCAAATGAT AGATACTTAC TGTTCTGGTA TTTACAACAT TAAGAACTAA 
    TTACAACTTA ATGAAGAACA GAACTTGCTG GTCTTTGTGT TAGTCTGACT 
    GTAGACCATA AGTATTAGAG ATCTTAACTC ATTCATTGAT CTGTAAATAA 
    TTCACAGAAC TAACAACTCT TTATAAAGCA AACAAAAAAG GACCAATCCA 
    AAAACTTGAA CTTTTCCTAC TATATACATC TTCAAAATTA GCTAACAAAA 
    GAAATTAAAA CTTCAAACAA GAAAAAGATC TAAGAACAAA AATATCAGTC 
    TCAAAGATTG CTTGCGGTGT ACGTCAAAGA GAGCCAGAAG AAGATATATT 
    AGGTTCCAAT CTCATACTTG AACCAACCTT GGTTTCAAGC T

AT1G11040.1

Model type
Protein coding
Short Description
HSP40/DnaJ peptide-binding protein
Computational Description
HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G44160.1); Has 19507 Blast hits to 13358 proteins in 2831 species: Archae - 102; Bacteria - 8184; Metazoa - 2012; Fungi - 1146; Plants - 786; Viruses - 38; Other Eukaryotes - 7239 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11050.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor-like kinase in in flowers 3 (TAIR:AT2G48010.1); Has 115297 Blast hits to 114175 proteins in 4324 species: Archae - 104; Bacteria - 13350; Metazoa - 42303; Fungi - 9816; Plants - 32853; Viruses - 335; Other Eukaryotes - 16536 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11800.1

Model type
Protein coding
Short Description
endonuclease/exonuclease/phosphatase family protein
Computational Description
endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Zinc finger, RanBP2-type (InterPro:IPR001876); Has 386 Blast hits to 366 proteins in 96 species: Archae - 0; Bacteria - 14; Metazoa - 170; Fungi - 14; Plants - 104; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11803.1

Model type
Pseudogene
Computational Description
pseudogene, auxin responsive protein, blastp match of 74% identity and 1.2e-15 P-value to GP|3043536|dbj|BAA25434.1||AB000708 SAUR {Raphanus sativus}
Link
InterPro Scan - TAIR

AT1G11806.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein, likely a tandem duplication of the immediatly downstream hypothetical protein which has since degenerated.
Link
InterPro Scan - TAIR