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13-4638-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26191333 [Map]; Strand: c
      • AT1G69620.1 - [+] show detail - ribosomal protein L34
        Distance: 10; Region: intergenic
      • AT1G69630.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 307; Region: intergenic
    Flanking Genome Sequence: 13-4638-1 - 3-prime edge 
    GNGTTNCGGG ATCAATANAA TTAACAGTGG GGGTCNNATC TCNAAGCGNC 
    GCANCCNTNG AGNGTCNGCA ACNCGTGCNA NATGATACGA TGANGNTATN 
    ATAGATGGTN GNGCACNTTT TTTTGGCCTC GTTTATTNTA ACCCCCACCN 
    NNTTTANATA NNGNCNATTT NTTAACATGC TCCCAAAGCN TATNTTTGCC 
    ACTATGGAGG GATNCTGATT GATTTGTGCC NAAAACATGA TGNNTTTNCG 
    AACTTAAGCA CTTCAATATC ATCNCNAACT AAAAGAAAAC ANAGAAATTA 
    CCTGCCCGGG CCGGCGNCCA CTCNTGCCNT ATNTTTNTNG TAATGGCANN 
    TGNCTNTTAC NATATANATN TTNTATNTTT GTANTTNTNT ATACNTNNTT 
    TGNGNGCGNN ANNGTGAGAG CGAGNNNNGG AGNGNGCGGG GGNGNNGTNA 
    NANAACTCNA ATTGGNANGG CTGNNCGGCN GNTCCCCNAT CATNCNGGNA 
    TNNGCAGGGC NCNNNCACAA ACANTGAATN TAGAATTCTA AANTNATTNN 
    NNNNANTNNA AGTGGNNTTG GTTATATANC GNNATAGNTN TTGTATNTTT 
    NGGGNTATAN NCNTTNATNN GNACGNNNNN NNTNTNAAAA NNNATTGNNN 
    CCTNNGGAAN GACCNANNNT CTTGNNNGGC NTTTCAATGG NAAANNNGGN 
    NANAATGGGN GGCNGGNGGG TTTNNNTGAA TTTTTGNNGA NANNGNTNNN 
    NGTGGATTNN CNGNANAGAN TNT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 96749 [Map]; Strand: w
      • AT2G01140.1 - [+] show detail - Aldolase superfamily protein
        Distance: -94; Region: promoter
    Flanking Genome Sequence: 13-4638-1 - 5-prime edge 
    ATTTTATTCC CCAATTTACC GTAAATGACG CTTTTAACCT TGAGGGAGAT 
    ACTGGTAATT TTTTCTAGTA GTTCATCAGT CTCTCAACAA CAAGAATCTG 
    AGAATAACCA AAACTCTACC GTTTCGTCTA CCCAAACTAT CCTTCTCCTA 
    CCATTGCCTC TTCGTCTAAC TCAATCGTTT TTCTTAATTA ATCAAATTAC 
    ATGACCTATC ACCTCTTCAA GGAGTGTGAT GAAAGAGAAT GGGCCGGATA 
    TTCCCTTTTT TATCTGTTGG GCCACAATAG TAAACAACTT ATATAATGGG 
    AAAACTCTTT TACGTAATTG ATTTTTGGGC CCATTAGTAA TAGGGCTTAG 
    TTTCTGGTAA ATAATAAGAG CCCACGACGG CTTTGGTGTT CTTGGGTCTT 
    TTTCTTCTTT TTTTCCTTTT TATTAAGGCA ACCATCCAAT AAGTCCAAAT 
    ATTGGTGTTA CTCGTAACAG GCGAGGAATG TGTAAACAAG AAGAGAGAAA 
    ATGCAAGTTC CGAGAAACGT TATATATATG CGACATGAGA AAGTGGCAAC 
    TTTTTCTTTC TTGTATCTTA CACTACTTTT TTGTATTTTT AAAGTATCTT 
    TGATTTGATA ACAGTTTTCT AAAACTGTTG GCCACAATTT AAATGCATAT 
    TCATATGTAT GTTCAAATTT ACAGCAACTC AGTTTGACCC CACAAAAAAA 
    GGGA

AT1G69620.1

Model type
Protein coding
Short Description
ribosomal protein L34
Curator Summary
putative 60S ribosomal protein L34
Computational Description
ribosomal protein L34 (RPL34); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT1G26880.1); Has 951 Blast hits to 951 proteins in 317 species: Archae - 65; Bacteria - 0; Metazoa - 298; Fungi - 143; Plants - 198; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69630.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G78750.1); Has 2345 Blast hits to 2298 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2342; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01140.1

Model type
Protein coding
Short Description
Aldolase superfamily protein
Computational Description
Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, pentose-phosphate shunt; LOCATED IN: mitochondrion, chloroplast, plastoglobule; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 2 (TAIR:AT4G38970.1); Has 4797 Blast hits to 4792 proteins in 909 species: Archae - 0; Bacteria - 723; Metazoa - 1159; Fungi - 8; Plants - 476; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).
Link
InterPro Scan - TAIR