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13-4665-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5806535 [Map]; Strand: c
      • AT4G09080.1 - [+] show detail - Outer membrane OMP85 family protein
        Distance: 180; Region: intergenic
      • AT4G09090.1 - [+] show detail - Carbohydrate-binding X8 domain superfamily protein
        Distance: 685; Region: intergenic
    Flanking Genome Sequence: 13-4665-1 - 5-prime edge 
    ATTAATAGCT AGAGAGTTAC GCAAACAAGT GGTAAAAATC TGGAACCTTC 
    TATATACAGT AAAAATATAT ACAAGTTACC ATTTCGGATA TATGACGGTG 
    TTTCACAAAC CGGCCAGATG TAATACAATA AACCTTATTG GTCCGTCACA 
    TCCCATTGAG AGGACATAAA CATCCGAGAA ATGCGAGTGG ACCAATAAGG 
    ACTAGGTCAT AAGTGTCGGA AAAGTCGTTT TGCGTAATCA ACAAGTTAAT 
    AGAGAGGGCA TGAGTAAATG TAGTACGTGT TCTACGTCTA CAGTGAACAG 
    ACTTCTTCAA AGTCAAAAAC AAATCTAACT AAACATTTAC TGTCGTGACG 
    AGAGACATGA AACGGCTTGT TCTTATTCTC TTCTATCGCT TTAAACAAAT 
    GCCTAAACTC AATGACTTGC TATGCACGCA TTTACATAAC TAGAGTATCA 
    GGATTATAAA CCAAAGTATT AGAGTTAAGA AAGAAAGCAG CACAAAGTCT 
    TCATGGCATG ACCTTAGTAT CTCTCCCCGA ACCTGAGAAA CAGAGCACCG 
    GTTCCACGAT TGTGACGTAC AGTATATTCA GCTCGCACCA TACCGAGTTT 
    CACACCCAAA CCATACGATG AACCATGTCC CATTTTCCTG TAAAGCCCTG 
    TNGGATTCCC TTTCACATCC TTTGAACTTC CCAAATCGTT CCATGCTCAN 
    CAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5806651 [Map]; Strand: c
      • AT4G09080.1 - [+] show detail - Outer membrane OMP85 family protein
        Distance: 296; Region: intergenic
      • AT4G09090.1 - [+] show detail - Carbohydrate-binding X8 domain superfamily protein
        Distance: 569; Region: intergenic
    Flanking Genome Sequence: 13-4665-1 - 3-prime edge 
    CTATTAATGT ATTAAAGATT TTATTTAACA AAATAAAACT CAAAAGTCAC 
    GAGTTCTAAT GTCGAAGGTT AAAAATAAAC AATTTTACAT ATGTTGTGAT 
    CTCTTTGTGA GTTTATCTAT TTCTGATTTT AATGGTTGTT AGAATTGCTT 
    AAAACGACCA TTACTGCAAG TTGATATCTA TTAAACCTTT GATGAGCTTA 
    TTGTTCTGGA ATTATCAAGG ATTGGGGTGG TTTCATGTAT TATCAACCGT 
    CTAAAGGAAA TGCATAAAAT ACAGTTTAGA AAGTTTTTAT TTCAATGGAG 
    ACTAAATATA ATAGAGACGT GATGGTAGAT TTTCATGAGT GGTTAAGTTA 
    TGAACTTATG ATGGTATATA TTTGAGCCTC GTGGTTTGAG TGGTGAAAGA 
    AATTTGTTCA GACTGAGTGG NCTTTATAAA TATATTTATT TTTTGGGATT 
    TTGAAGTGCA ATTTGGATAT GTCTCGTTTT TCATGTCTTA TGTNTACAAT 
    CAAATTAATT ACCAATTGNN TTCATCANTG GATGATTGNN TTCNCTAATG 
    AATGATNGNN NTCNCCNNTN NTTTNTTNTG CNTATTANNN NTTAAAACCC 
    NNTNTTTTTT TTNAAANACT CNCNCNTTTT NNNAANNTGG NTNNCCNNNC 
    CNGGG

AT4G09080.1

Model type
Protein coding
Short Description
Outer membrane OMP85 family protein
Curator Summary
Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts.
Computational Description
TOC75-IV; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 75-III (TAIR:AT3G46740.1); Has 439 Blast hits to 437 proteins in 90 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09090.1

Model type
Protein coding
Short Description
Carbohydrate-binding X8 domain superfamily protein
Computational Description
Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT4G09465.1); Has 1327 Blast hits to 1279 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR