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13-4693-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2932011 [Map]; Strand: c
      • AT1G09080.1 - [+] show detail - Heat shock protein 70 (Hsp 70) family protein
        Distance: -170; Region: promoter
      • AT1G09080.2 - [+] show detail - Heat shock protein 70 (Hsp 70) family protein
        Distance: -170; Region: promoter
      • AT1G09090.1 - [+] show detail - respiratory burst oxidase homolog B
        Distance: -728; Region: promoter
      • AT1G09090.2 - [+] show detail - respiratory burst oxidase homolog B
        Distance: -728; Region: promoter
    Flanking Genome Sequence: 13-4693-1 - 3-prime edge
    CTTATTTTGT GTTGGCGCGC TCCTTACTTT TTACACACGT AAAGTACCCA 
    ATCACAAGCA GACACGTGAC ATTAAATCGG TCATCGCAAA ATCTTTCAAA
    GGTTTTACGA CTTCTTCGTA TGTATGTATA GTTATCCAAA ACAATTATCA
    TTATAATCAA AATTAAATTA TTAACAATGT TTTTATCACA TGCATGAATT
    ATTAAAAGAT TTTTTTCGTG TACCGATTAA TAAAATAAAA AGATTTGCGT
    CATAATTTAC ATAAGGATAA TTTCTTTTGT TATTAATGAA TTAGTGTAAT
    GCCAAAACTA CTGCATATGC GGTGAGGTGT AATATTTGGA AGAACATGAC
    TAATGCTTAA CCACTCCATT TATTTATCAC GCAGACATAT ATATAANAAA
    TATGCCATTT TCTAATTACT CTCAGTGTTG TATTTGTATT GGAATCAATG
    CACAATAAGA ATNGGATATT GGATAACAAC AAAACAGGCA AACCAACCCT
    AATGGCGGCC CTAGGTTTTT GGCTTCTAAT ATTAATTCAC TTNTCAAAAC
    TAAATAATTG ACCATATATN ATTNGATTNT TAAAATATGT CGTTGGAGTA
    AATCAATATT TTTAATACTA AGGTANTAAN TCATATGGGT NACTCGAAAT
    TGNCAAAGGG TAANATGGAT ATTATAATNN NANTTTATNC NTTGGNAAAA
    NGGTAATTTG GGCCATTATA NTCCGNCTTT TTTG

AT1G09080.1

Model type
Protein coding
Short Description
Heat shock protein 70 (Hsp 70) family protein
Computational Description
BIP3; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat, pollen tube growth; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1); Has 36561 Blast hits to 35981 proteins in 4871 species: Archae - 169; Bacteria - 17528; Metazoa - 4151; Fungi - 1824; Plants - 1283; Viruses - 337; Other Eukaryotes - 11269 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09080.2

Model type
Protein coding
Short Description
Heat shock protein 70 (Hsp 70) family protein
Computational Description
BIP3; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat, pollen tube growth; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G42020.1).
Link
InterPro Scan - TAIR

AT1G09090.1

Model type
Protein coding
Short Description
respiratory burst oxidase homolog B
Curator Summary
NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-
Computational Description
respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 1619 Blast hits to 1551 proteins in 238 species: Archae - 2; Bacteria - 81; Metazoa - 636; Fungi - 280; Plants - 489; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09090.2

Model type
Protein coding
Short Description
respiratory burst oxidase homolog B
Curator Summary
NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-
Computational Description
respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR