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13-4702-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26443808 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 13-4702-1 - 5-prime edge 
    AATGGCACGT TGCTTCATCA TTCATAGCCC ATCCTCCATT TCTGCACATT 
    GATTGTGTGA ATTGTATCAT CACTACGTAG CCAAAATGAT CAAATTAAGG 
    TCGTGACCTA CTTACACAAA CTCTAGTTGC CCGGATTTCA CTAGTCTCCT 
    CACTTGCTCT TGTCTCTCGG GGCTTTGTTC TTCCCACCAA CGCGTAAAGA 
    AGGCCTTTTT CATGTACATT GATGTTCACA TAAGAGAAGA AAACATATAT 
    TATGGTTTTA TGAACAAAAC CATTATTAAT GTTTTACCAT TTCCGCAAAC 
    ACAAACTTTC TATTGGGATC ACGAAGTAGA GAATCCACCA CCGAGTCTAG 
    GACGTTCCTC ACGCAAGCGT TCTGAAACTC ACGATTCATT TGGGATATAT 
    AGTATGTTAG ACTCGTCTCT ACATACATAC ATATATATGA TTCATCATTC 
    ATCTGTAGAT AACATACCTG GATTCTGTTG TTAGATCCTA CGTAGTACTG 
    ATCAACAGTT TTCAACCAGC CGACATCGTC ATGCGAATGC GGAACAAGAT 
    GAACATTTGG TTTCCCCGGA ACCACTTTAG CTTCGGTTCC ATACTTCACG 
    TATCCCCCGC CATTGACGCT CTCAACCACG ACNACAGAAG AAGAAAAACA 
    TTACCNCAAA GTGATCCTTT CAATAAGACA TACCCNGTTT CTCCATTTTC 
    CGATGGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26443692 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-4702-1 - 3-prime edge 
    GTGCCATTAC ATAGATATGA TAGACCAAAC CACAAAGGGG CATCGGTTTA 
    TAAAGCAACA ATTCAACACA ACTCCACGTG CTGCTTGGCA AATCGATCCC 
    TTTGGTCATT CCTCTGTTCA AGCT

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR