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13-4740-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17944548 [Map]; Strand: w
      • AT2G43140.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -8866; Region: intergenic
      • AT2G43150.1 - [+] show detail - Proline-rich extensin-like family protein
        Distance: -1345; Region: intergenic
    Flanking Genome Sequence: 13-4740-1 - 5-prime edge 
    CTTGANAAAC TAACAAAATC GGTTATACGA TAACGGTCTA TATGTTATTA 
    CTCTTAGCCC CGTATTAGCT NTCAAAGCGT

AT2G43140.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G05805.1); Has 1572 Blast hits to 1554 proteins in 68 species: Archae - 0; Bacteria - 2; Metazoa - 49; Fungi - 2; Plants - 1505; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G43150.1

Model type
Protein coding
Short Description
Proline-rich extensin-like family protein
Computational Description
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); Has 134937 Blast hits to 39196 proteins in 1663 species: Archae - 308; Bacteria - 21148; Metazoa - 50725; Fungi - 18898; Plants - 23643; Viruses - 3727; Other Eukaryotes - 16488 (source: NCBI BLink).
Link
InterPro Scan - TAIR