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13-4763-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334219 [Map]; Strand: c
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -742; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -513; Region: promoter
    Flanking Genome Sequence: 13-4763-1 - 5-prime edge 
    TCTACTATAC ATTTAGTACC GAATGGATGT ATATTCAGTA TTGGATAGTT 
    AAACTTGTTC CTTAAGAAAA AAAGAAATCG AGTTCATGGA CTGAGATTTG 
    CAAACGAGGT CTTATCATAT CTTCTTGTAA AATACCCGAT CGGGTTCTGT 
    TCTCAAATAA TTTCAGGTAT CAGGTATTAC ATGAACCGAA ATTGATATCC 
    GTGAGTATTT TTTATTACCC GAACATATAT ATACATATGA GGACATATAT 
    ACTGATAACT TGAGTTTGTG AATTGTTTAA TGATTGGATT ATGGAACAAG 
    TTAAAAAAAA GGTTTACTTC TTGTTTTTTA TTATNGTCAT AAATGAAAAC 
    TTCTTATAAT TTTATGGATA GTTTTATATA TGTTNGGGTA TATCTGGACA 
    AGGTTTGGGT AAATAATATT GAAACCCAAA ATAATTTTGG TTATTTATNG 
    GGTTCTTCAA CCTATNCCCG AAGAGAACCT ATNGCTNANA TAATACGNAT 
    AATNGAACCA NNNTTAAACT NNTNAACCGA ACCCNAAAGA NNNNANNCNN 
    CCNNNNNNGA NNNNNNAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 334335 [Map]; Strand: c
      • AT4G00760.1 - [+] show detail - pseudo-response regulator 8
        Distance: -858; Region: promoter
      • AT4G00780.1 - [+] show detail - TRAF-like family protein
        Distance: -397; Region: promoter
    Flanking Genome Sequence: 13-4763-1 - 3-prime edge 
    ATAGTAGATA CGAATTTCCT CCGGAATGAC TCAGAGAACA GTGAGAGATT 
    AGTAGATAAG ATACTTAACT TTTGGGGAGA GACCTCAGGA CCCATATGAC 
    TTGAAGACTC ACACCAGCTC TGAAGTTAGA CGGGTTTTGG GTCTCCGGGT 
    CAAGTTTAAA GAAAAAATGT TAAAGTAGAT TTCCCTTTCT ACTTTGGTTT 
    GAGATGAGTT TAGAATTTAG TTCGATGTTA CGAACGTGAA TATATACCCA 
    AAACTTGTGA TGTATATAAA TGCTTATCAA TCTCGAATCT CTCTGTTACT 
    GTAGCGTGTA ATCCACGTTT GAAGTTTTTG TTCGATTCGA TAAATGTTGG 
    AGCCAAAACA GAGACATCAG CAAAAACATG GGATC

AT4G00760.1

Model type
Protein coding
Short Description
pseudo-response regulator 8
Curator Summary
Encodes a response-regulator like protein.
Computational Description
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00780.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR