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13-4799-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21609792 [Map]; Strand: w
      • AT5G53280.1 - [+] show detail - plastid division1
        Distance: 374; Region: intergenic
      • AT5G53290.1 - [+] show detail - cytokinin response factor 3
        Distance: 8021; Region: intergenic
    Flanking Genome Sequence: 13-4799-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAAACTA CAATAAGTCC AAATTGGAAG AATGAAGGAA
    ACATGAATGT GAATATAACA AAATACTTTT CCTTAAGATC TGTTTTGTCT
    CTCTTTTTCT TTTGCTTTTG TACACATAGC TTTTTCTCTA CACTCTTAAC
    GTTATAAATG GCNTTCTTCT TTTTCTTTCT ATCTTTGTGT ACTGTCTTCT
    TTATTTTTAT TGTGTAAACA TATGTTTTTC AATGTGATTA GACATATATA
    AATACTATAA CTTACGGATT GTGTTAGCAT TTTGTAGGAC CCGGTTCGCA
    TTTTGGGAAA TGTCAGCCCG CCGACCCCGG TTTTCCTCCG TAAATAGGTC
    AACCCAATGT TTTTTCTTTG TCTACAATGG CTAAGACCGC AAACAAAATA
    CTTTTTCACA TTTCGATTAT GATTGATTGG TAATGTTACT TAATATTACA
    AAATACATGA TAAAATAAAT CTATAGGTCA TAACTTCGAA ATCAATACAA
    ATGAGGAAAC TCAACTTACG ATTTTAAAAG AACTTTTGTC ATTTCACAAA
    TATGGTTTCA TATGATAATT TGGTAGTAGC TTTTCTTTCT CTCCTTGNTT
    TACGATAGGA AAGTGAAAAC TATTTTTTTC TAGTGAAACT ATTTTTAGTC
    AAGCAAGAAA TAGTAATGAT AACCAAAGTC ATACTTGNAA CCCACAACGT
    AATCATATAT TGGGTTTNAT

AT5G53280.1

Model type
Protein coding
Short Description
plastid division1
Curator Summary
An integral outer envelope membrane protein (as its homolog PDV2), component of the plastid division machinery. Similar to ARC5, PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site.
Computational Description
PLASTID DIVISION1 (PDV1); BEST Arabidopsis thaliana protein match is: plastid division2 (TAIR:AT2G16070.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53290.1

Model type
Protein coding
Short Description
cytokinin response factor 3
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
cytokinin response factor 3 (CRF3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR