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Mutant Lines
13-4809-1

13-4809-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 18488472 [Map]; Strand: c
- AT4G39850.2 - [+] show detail - peroxisomal ABC transporter 1
  Distance: 0; Region: exon1 (5UTR)
- AT4G39850.3 - [+] show detail - peroxisomal ABC transporter 1
  Distance: 0; Region: exon1 (5UTR)
- AT4G39850.1 - [+] show detail - peroxisomal ABC transporter 1
  Distance: -47; Region: promoter

GAGATAGAGA TAGAGAGAGA GAGAGAACGA GAGAAAGTGA GAGCCGAAAC 
TTGGGAAGAG GAGAAGATGA TGACGCTTAT TTTACACGTG CGAACATATT 
CACTCGTGCC ATTTTTTACT TTTCTTCTAT TTTTATACCA TCTTCTTGTC 
TAGTACTAAT TGATTTCGTT ACGAATGCTA TCAGATATTT TTACCTTTTT 
TTATAGATTT TTTACTCNGG TAACTCTAGC CACCCTTTCA TTCTCGTTAA 
AAAAAATGTT AACGCTGTAC TGTAAAAATA AATAAAATAT CTTANCCTAG 
TNGGTAATGT ATCAAACTAT CATTTGTTTC TTTTTTCTTA TTAAAAAACT 
NGGTACTAAA ACCATGTATA GACAGATTTA TTNCCTTTAT GTATAATNGG 
AATACAAATA GTACTATGTA TANAAGTGTC GAGTCCTATG GACATACACT 
GCTATCCTTC CATNGGTAAG TTTGTTTTTT CTAACTGAGG AAATTGNGAT 
NGGTCTGNNN NCTTANNTNT NTGATAGACN TNTTNNCNNT AAAANNNTGG 
NTNGTTNTTT NATGTTNGGA AAAAANGTNG ANNTTNNNNC NCNANNNTNT 
NCNNGGNCNT TNNNNNNTNN NCNCNANNNN TNG

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 18488588 [Map]; Strand: c
  - AT4G39850.2 - [+] show detail - peroxisomal ABC transporter 1
    Distance: 0; Region: exon1 (5UTR)
  - AT4G39850.3 - [+] show detail - peroxisomal ABC transporter 1
    Distance: 0; Region: exon1 (5UTR)
  - AT4G39850.1 - [+] show detail - peroxisomal ABC transporter 1
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 13-4809-1 - 3-prime edge
```
TCTATCTCTC GATTTGGGGG AGTTCCGTCA CGGTGGACTA GTACGTCTCG 
TTGCCGTTGG TGGCGTAGTA GGAATTAATT TCCTCGGCGT TGAGATTCAC 
ATGGTCTAGA ATT
```

AT4G39850.1

Model type: Protein coding
Short Description: peroxisomal ABC transporter 1
Curator Summary: Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description: peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39850.2

Model type: Protein coding
Short Description: peroxisomal ABC transporter 1
Curator Summary: Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description: peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1).
Link: InterPro Scan - TAIR

AT4G39850.3

Model type: Protein coding
Short Description: peroxisomal ABC transporter 1
Curator Summary: Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description: peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1).
Link: InterPro Scan - TAIR