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13-4814-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6746963 [Map]; Strand: w
      • AT3G19450.1 - [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
        Distance: 0; Region: exon5 (CDS)
      • AT3G19460.1 - [+] show detail - Reticulon family protein
        Distance: -407; Region: promoter
      • AT3G19460.2 - [+] show detail - Reticulon family protein
        Distance: -407; Region: promoter
    Flanking Genome Sequence: 13-4814-1 - 3-prime edge 
    CCTGCCCTNT TTAGTTTGTA GTTGTTGCAG CCTCCTNCAC CAGATTACTT 
    CCTGCAACAT CAACCACAAA TCTGTAACCG AACATCTGTT CTTGCGAAGC 
    CTCTCAAACG CAATGTTAAG CGTCATCGAT CTTCACAGTT TCAATCGTCG 
    A

AT3G19450.1

Model type
Protein coding
Short Description
GroES-like zinc-binding alcohol dehydrogenase family protein
Curator Summary
Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.
Computational Description
ATCAD4; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase 5 (TAIR:AT4G34230.1); Has 40533 Blast hits to 40509 proteins in 3018 species: Archae - 756; Bacteria - 27152; Metazoa - 1406; Fungi - 3053; Plants - 2651; Viruses - 3; Other Eukaryotes - 5512 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G19460.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G15280.1); Has 1108 Blast hits to 1108 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 644; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G19460.2

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G15280.1); Has 985 Blast hits to 985 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 550; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR