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13-4838-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3409132 [Map]; Strand: w
      • AT3G10890.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -132; Region: promoter
    Flanking Genome Sequence: 13-4838-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACAAT TGCAATGCAT GAACATTCTA 
    AGTCGTGGAT TTTCATAATT ATACACGTGA CATCCATAAT ATATAAGAAA 
    TAAATAAACA ATAATTTTTA CATATAGTTA TTAAAATAAA ACAATTATTA 
    TTACAACACA TAAAAAGAAC AATTAGAATT TATAGAATAT CACCTTTTAT 
    GGTCTAGTTA TTTTGTAATC TTTATTTGAA AACCGTTCAT TGACTAACTT 
    TCATTGTGGT CAACATGTTG ATTATCTTCC TAATCAATAC TGGCTAACCA 
    TATTTATTCT TCTAATGACC TTCTTTGGTT ATTTCCCCTT GAAATCAGTC 
    ACCAAACTAT ATGATTTGTT TCCCTCGATG CCTCTCTAAT TTCAAAATTC 
    AGTGGTAGCT CAAATTATCT TCTTAATTTC AAAGAAAACA CACAAACAAA 
    TAATGTTAAT TATCTTGAAC GCAAACACAT TCAAATTAAA TGTGAAAATG 
    CAAAAGCAAA CAATTAACTC TAATGCATAC AACATACCTA AAAAAAGTAA 
    ATGCCAAACT ACATCAACGT TAGACAATAG CGCTAAATAT ATATTTTAAG 
    AGTTAAGACA TCAGTTTCAA TATTTCTAAA CCCAAACAAA AAACCTAAAT 
    GCAAACGCAA AACATATAAT ATNGCTTCTT CTCTTCTNCA ATCAAAATCC 
    ACAAAAGCAA AACAAACAAA AAAGCACAAA TAGTTTCGAG AAAAACCTAT 
    TTGGAAGGTG GTNNAATTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3123532 [Map]; Strand: w
      • AT3G10114.1 - [+] show detail
        Distance: 3507; Region: intergenic
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -2491; Region: intergenic
    Flanking Genome Sequence: 13-4838-1 - 3-prime edge 
    CTTTGTGCTG CTTCAGAACT TTTAACGGAG GGAGACATGC GATGCTGCTC 
    AAGTTGAGAT C

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR

AT3G10116.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Computational Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10890.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, petal, embryo, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G10900.1); Has 765 Blast hits to 758 proteins in 196 species: Archae - 23; Bacteria - 223; Metazoa - 0; Fungi - 184; Plants - 307; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR