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13-4910-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3243226 [Map]; Strand: c
      • AT5G10310.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -960; Region: promoter
    Flanking Genome Sequence: 13-4910-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTCTG CGAAAAATTG TTGGAAAACA GCAGCAGAAA 
    GAGACATGGA CTATTATTAT AATATTAAGG GGACAGATGT TCACATTTAA 
    TAACATAAGA TTGTTGAAGT TACCTTAATT GAATGCAGTC AAAATTATAA 
    AAAAAATGTG TCATCCTTCT TCTTCCTCTT CATTTATTGC TCTTGGTAAA 
    TTTTTTACCT CTTTTCTCAT TTTGTTCAAA AGACAAATCT CAGTCAAACT 
    TGTGGTTTTT ACTACACACA CTATTACTTG CTCAGTAATT TCCCTATTCT 
    GATGAAAAAA GGAAACCCCA AATTTCCCTA TTCGTTTACT ATTTTCTGAT 
    GATAAAAGGA AACCCCAATT TGATGTGTCA GTAAATAGAT ACTTACCAGT 
    GAAATGTAAT TCAACTCTTC CTTTTTTTTT TAACCGTNNA ACATTCCNTT 
    CAACGTTNAA ATNGTNGAAA AANCTAGTNT TAGTAANGAG TTGGGANCCA 
    TAAANCATTT AATTAAGTTT NCCAAANAAA NCNTTTAAGT CCAAANATNT 
    NGGTATTAAN CCCATGTNGC AAGGCAAATA CTGGTTGAAT ATTTGGNCNA 
    CATGTNGCTN TGCAAACTTT GGTCAACNCT AGGCTCTTTT TTGTTCTANC 
    TAANAACCAA CATTGNCCCA ATTTTTAATT CCGGTTNNTT ATNTATNTNC 
    CTNCCANNGN TTGGCAAAAT ACAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17742964 [Map]; Strand: w
      • AT2G42600.2 - [+] show detail - phosphoenolpyruvate carboxylase 2
        Distance: -3991; Region: intergenic
      • AT2G42610.1 - [+] show detail - Protein of unknown function (DUF640)
        Distance: -4953; Region: intergenic
    Flanking Genome Sequence: 13-4910-1 - 3-prime edge 
    AACATCTTCA CGCATGAGTT GCCAAAAATG TCACAGTCTC AAAGGCACTC 
    TTATGCATTA GTCTTTTGCC CCCACAAATC TTTTCTTTGC TTCTCTTTTT 
    GTTGATAGTG ATTCATCTGT CTTCCCACCC ACCCTCATTT TTCTTCATTA 
    TTGTTTCTTT CCCTTTTTGT CAATTCATCA TTTTAACCGG ACTCAATCTA 
    ATTTGGTTTT AGATTCGGTT ATGAAGTCAT GAACCGGTTT TATAACAGTT 
    TAATTTGCAT CGGTCGATTG AGACAACGAT AACAAATAAT TGAATTTCAA 
    CAGATTATAA AGCATTGCAT CGGTCTGTAT ACAGTACATA TAAAATGGGG 
    ATTGCTAAGG TAATGGAAAA AAATAAAATA ATCAATAATA ATTAAATTGT 
    GACCTAAAAC TTTCTTTATT CGAGTAGATA TATCGACAAG TCTGACAAAG 
    ATTAAAATAC TAAAGATTTG GAAGAANATT CGGAAAGGAA AAAAAGTATT 
    CATGTATTTT CTTTATTTAT CGTACCATTC ACTAACTTTA CAATTTTNTT 
    ACAAGTTCTG AACAATCTAT CTTTTTGACA CATAAGTNNT AACATAACTN 
    TTCNCAAGNG AATTACCNNN CCNGGNNGGN GANNANACG

AT2G42600.2

Model type
Protein coding
Short Description
phosphoenolpyruvate carboxylase 2
Curator Summary
Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.
Computational Description
phosphoenolpyruvate carboxylase 2 (PPC2); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity, catalytic activity; INVOLVED IN: tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 1 (TAIR:AT1G53310.3); Has 6860 Blast hits to 6799 proteins in 1908 species: Archae - 27; Bacteria - 2656; Metazoa - 4; Fungi - 0; Plants - 1774; Viruses - 0; Other Eukaryotes - 2399 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42610.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF640)
Computational Description
LIGHT SENSITIVE HYPOCOTYLS 10 (LSH10); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10310.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR