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13-4954-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
seedling (PO:0008037)
  • desaturated green (PATO:0001272)
    (Seedling::pale green)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2204842 [Map]; Strand: w
      • AT1G07180.1 - [+] show detail - alternative NAD(P)H dehydrogenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4954-1 - 5-prime edge
    GGTACGCTTG AGTTTAGGTC TGTTGCTGAA CCAATCTCTC GTATCCAACC 
    GGCGATTTCA CGAGAACCCG GTTCTTATTA CTTCCTTGCT AATTGCTCCA
    AACTTGATGC TTGATAATCA TGAGGTAATT GCTAATTGGA TATTAATATT
    GGTGAAGTTC TTGAAATTGA GGAAAAGTCT TGCAGATGTA TCTATTTTTT
    TAGTTTTCTG TTTGGATTTT TCTACAATTT GTGGATGTAG AAGTAGTTTC
    GTTTAGACAT TGTTTCAAAC GCTAATTTTG CGTTCACATT TAGGTATATC
    AAAATTTCCA AATTGTAAAC GCAAACGCGA CTTTTGTGTT TGTGATGAAA
    GCAGAGTGCT TTGGACTGTT GTATATGATA TGTGTGAATC ATGCTCTTGG
    TTTAAACAGG TGCATTGTGA GACTGTAACT GAGGGGTCTA GCACATTGAA
    GCCATGGAAG TTCAAGATAG CTTATGACAA ACTGGTACTA GCTTGTGGTG
    CANAAGCATC CACATTTGGA ATTAATGGCG TCTTAAAAAA CGCCATTTTC
    CTCCGTGAGG TTCACCACGC TCAGGAGATC CCGTAGGAAG CTACCANCCC
    GGGCCGNCAA CCANCGGNCC NCTNNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2204775 [Map]; Strand: w
      • AT1G07180.1 - [+] show detail - alternative NAD(P)H dehydrogenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4954-1 - 3-prime edge
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGNGGCCNTC 
    CNNACCNCCG TCGCGTTGAA GCCAAGAGAG GAGTGAAGAC CATGTGGTTC
    CTAGGAGAGA CACAAACGAC GTCGTAAATA CTAGTATCGA TCCCTTTTAA
    TACCCGACAA CCCGCCCAAC CCGACCCGAG AACCAAAACT CTCGGCTTCT
    CTCCCTCTTT CGTCGGAGCC AAACCGTCGT AACGTTGTGG CTCCAACGCA
    TTAACTACAT CCTCCTTTGC TTGAACCGTG TCGGTTACTT GTTGCTTTTG
    CAGAGCGGTG CAGAAACGGG ACGAGAGAGT GTAGGATTCG GGGTTTCTGA
    ACACGTTTCC GACAGACGAA GAAGTGGTCT GCGAGATTCT TGCTAGGTTT
    TTGATCCACA ACATGATTCT TTAGGTACTC TTCTTCAATC GAGAGAAGCA
    AATAATACTC CAAACCTAAT GTGGTTAAGA GAATCGAACA AACTCTGCTA
    CGAGCCGCCT TTGGTATACT GTATTATTCA CTGTAATACG TATGAGAAAA
    ACCTACGTGC CANATTAGGA AATGACAGGT GGCACTCTGA TTCTCTTTCA
    CCCAGAATAA ANGGGAAAAT AACTTCTTGA TTTTCTTTTT TGGNTAGCCC
    ACAGAAATAT TTAAATGTTT AGAAAAACAT TTTCAGTNGT NTGCNATTGG
    GTNGGGCGTT TTTTTAAGGT GGGNAAACAA AATNGNGAAT AGGTTNNATG
    GGGGNTGNNA NAATTTCNAN ATTTNNNNTC NCGNGNNNNN CGN

AT1G07180.1

Model type
Protein coding
Short Description
alternative NAD(P)H dehydrogenase 1
Curator Summary
Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.
Computational Description
alternative NAD(P)H dehydrogenase 1 (NDA1); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane, mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 2 (TAIR:AT2G29990.1); Has 9792 Blast hits to 9601 proteins in 2135 species: Archae - 248; Bacteria - 7524; Metazoa - 53; Fungi - 647; Plants - 379; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).
Link
InterPro Scan - TAIR