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13-4958-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19514370 [Map]; Strand: c
      • AT2G47560.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1642; Region: intergenic
      • AT2G47570.1 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
        Distance: 1528; Region: intergenic
    Flanking Genome Sequence: 13-4958-1 - 5-prime edge 
    CNAACATGGC AGCTTAAGTG AATACCCATA GATTCGCTAT TTCTGCGGCC 
    GACGTATGAG CAAACCCGTG AATTAAAAAA CCAACTTGTA CATCGAAATA 
    CTATTTTAAA CAACATTTCA CTAACCTTGG CCAATATATT AAAACTACGT 
    TAACTTTTTG TATATTTATA ATAATTGTAA TGTTGTTGAA CATTGAGAAG 
    CAAGAAAAGT AGAAAACTGC GAAATTGAGT GAGAAATGAA AAGAATAATA 
    ATAATGGTGA TGGTAACTAA TTATAGAAGA GCATATAATT TGTGACCCAT 
    GTTGTCTATG AGCGAAATAA TTTTTGATTT TATAACTATT AAATTTAACA 
    TGAAAAAGGT GTATAGTATC AAATCTAAAT CTTTTAAAAT AAGAGAGCTC 
    GGTTTTTACT TCTTCGACCG ATAAACCTCG CAGATACTCC AAGCACAATC 
    TACCTCTTTC GTTCTGCAAA CGGTTCANTA TGTTCTTGAT ACACACCCGC 
    CTTTTTCGGT GCCAATCCTN CACATNTTAT AGCATTCTCA ATTGATNTAG 
    ACTCAGCNTT CAAAACCTAC ATTGGCAATA TACATTTTTC TCAAAACGTT 
    AACCAAANAT CTTAAAGAGT TTTANGCTNA GAGTTCCCCA NTTNTGNNCA 
    AGNACATGCC TNNAATNGAA CTATTTCCTA TGCATTGATG NATTGATNCA 
    TAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19514486 [Map]; Strand: c
      • AT2G47560.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1758; Region: intergenic
      • AT2G47570.1 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
        Distance: 1412; Region: intergenic
    Flanking Genome Sequence: 13-4958-1 - 3-prime edge 
    CATGTTGGGT AATTTATTTG ATTATTGTTT AACCAACAGC AATAAGAGAG 
    AGAAAAGATT GTATTATGAT TTGATGAACA AGATAAGGTT GTCCATTGGT 
    CAAAACATTC CCCAAGTTGG GATATATTTC TATTTTCATC ATCCTTCCAT 
    GTGATGTGCC GTGCGGCAAA TCTAGAATAA TGTACTATCA AAGTTGTCAA 
    AAAGTAAAAA AGTAAAAAAA CATACCAAAA TATCAAAAAC AATCTTTGTT 
    AGTTTGTTTC CTTTCCGATG GAATCAATTT ACGACACACC AAAATAAAAT 
    GCAATCTAGG

AT2G47560.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: AtL5 (TAIR:AT3G62690.1); Has 10475 Blast hits to 10453 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2615; Fungi - 944; Plants - 5266; Viruses - 125; Other Eukaryotes - 1525 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47570.1

Model type
Protein coding
Short Description
Ribosomal protein L18e/L15 superfamily protein
Computational Description
Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G27850.1); Has 755 Blast hits to 755 proteins in 295 species: Archae - 15; Bacteria - 0; Metazoa - 328; Fungi - 154; Plants - 126; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link
InterPro Scan - TAIR