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13-4972-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222822 [Map]; Strand: c
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-4972-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTGATTTT 
    ATTTTTGTTG GCTAGAGATT TGTGTGTGTG TTTGGTTGAT TTGGCTGTTG 
    AATGATGTAG CTGGGAGTGA TTGATATGAA CTCGGAAGTG GTGGAACCGG 
    AGGAGCTTTT GGATCAGTTA AGAACTTTAA AGTCGGTTAA TGTTGATGGT 
    GTTATGGTTG ACTGCTGGTG GGGAATTGTT GAGTCACATA CACCACAGGT 
    TTATAACTGG AGTGGTTACA AGAAACTTTT TCAGATGATT CGTGAGCTTG 
    GACTTAAGAT TCAGGTAATG TTATTTGATC GATGAGTCTC AGTTCAGTTT 
    AGTGAAAGAT ATGCAGAGTT GAGGATGAAC CTTTTTAAAG TGTTCTTGAC 
    TTGAATTGAC TTCAGGTTGT TATGTCGTTT CACGAATGTG GAGGCAATGT 
    TGGAGATGAT GTGCATATAC AAATCCCTGA GTGGGTGAGA GAAATTGGTC 
    AAAGCAATCC TGACATCTAC TTCACTGACA GTGCTGGCAG GCGTAACACT 
    GAATGCCTTA CTTGGGGAAT TGACAAGCAA CGTGTTTTAA GANGACGGAC 
    TGCTCTTGAG GTATGGCTTT CTACTACTCC ATGCTAAAAA ATCTGTNNCN 
    AATTATCATT CNAANAATGT AATCTGCANC NAGTTGTANT NNGAANAATG 
    AAAANTTGAT CTGTATAAAA ANNGNTTACT GNCTCTTTGA ATCACTTGNT 
    NTGNNGGNTA CTTGAN

AT4G00490.1

Model type
Protein coding
Short Description
beta-amylase 2
Curator Summary
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR