1. Home
  2. Mutant Lines
  3. 13-5005-1

13-5005-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2932031 [Map]; Strand: c
      • AT3G09540.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -803; Region: promoter
      • AT3G09550.1 - [+] show detail - Ankyrin repeat family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5005-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCT ATCGAAGAAG 
    GTACAATGAT TTCTCCTTCT CCTTCATTTT ACATTTCTGA CTCCAATCGT 
    TACGAAAATT CGTTGCGGAA TTAGACAATG CGTGTTATTA GGGTTAGGTC 
    TTGAAATATC TCTTAGGGTG TTATTTTTTT TTAATCATTT TCTTCAACGG 
    ATCTCTAGTT TACGTGATAA ACAAACAAAC ATTGTGTAAT CAATCTCACT 
    CTCGCANANA AGGAACTGGA ACCAGGTATG GANAAGGTTC TGGCGACGGA 
    TC

AT3G09540.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G55140.1); Has 1920 Blast hits to 1910 proteins in 308 species: Archae - 2; Bacteria - 1025; Metazoa - 0; Fungi - 186; Plants - 681; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09550.1

Model type
Protein coding
Short Description
Ankyrin repeat family protein
Computational Description
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G12360.1); Has 55803 Blast hits to 24932 proteins in 1099 species: Archae - 58; Bacteria - 5470; Metazoa - 27318; Fungi - 5824; Plants - 4263; Viruses - 331; Other Eukaryotes - 12539 (source: NCBI BLink).
Link
InterPro Scan - TAIR