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13-5010-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26765485 [Map]; Strand: c
      • AT5G67060.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -643; Region: promoter
    Flanking Genome Sequence: 13-5010-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAT TGGTGTTCAG ATCCACTAAA GGCAAAGAAG 
    GCATAACGCG TTACGCGACA AAGCAAGGTT CATGAACCGG TCGTCTCACA 
    AGCACAACAA CGAGTATTCC ATTTTTTCCA CCATTATTAT TGTATTCATT 
    TCATAATCAA CACTTTTGTA TGTGAAAAAG GTCAATTAGG TTTCATATAA 
    TAGCTGGAGT AAAAGATTAT CAACTGGTTT TGTTGCACTA ATTAACGAAA 
    GTGTTTTCTT CAATCCAAGA AAAACGGTTA CTTAACCAAA ATATTATAAT 
    AAGAGAGAGA GAGAGGACTA TGATTTATAA GATTACCCCA CATCCACATG 
    AGATATGTCA GAATCCAGGG AGCAGTATTT TATTCTGTAA AATTTTCTGG 
    TCAGATTTAA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26763520 [Map]; Strand: w
      • AT5G67050.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -2323; Region: intergenic
      • AT5G67060.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2608; Region: intergenic
    Flanking Genome Sequence: 13-5010-1 - 3-prime edge 
    NGAACCTGCA GAGGTATTTT ACCGACCGTT ACCGACCGNT TTCATCCCTT 
    ANANCNACTN TTNNTCCTTG TNNGNTGCAC ATGGNCTNCN GANCNCCCNT 
    GNCAAATGAT AGCTGNTGNA ACCTAGACTA TTGGNAACAT CAATANAACN 
    NNTCTGAGCA NATCNCATGT NNTNGAGANG CNTGGTCTAG NTTGATACAA 
    ANATGATATT TANTTTCGAN NNAGTTAAAT ACAATCGTGC GATTATNACA 
    TTTAGTTGGT AGTNGGGTGA NCCANATTAC CANNNTGAAA TATGCGTGTN 
    TAAAAAANAG TNGNTCGATA CGTAAGTTAA ACCGATCANT TAANAATAAA 
    CCTTTNTGCA TATATCCAAA TTNGAATATC GGAAACAAAT AGCATAGTNT 
    AATTGTCTAT TTGTTNAATA ATGTGTAATG TNCCAAAGCT GAGATAGGCT 
    GCCTCCCAAG GCAAGGTAGC AATACAATCG NGTACATGTG CCNAGCATNA 
    TCTATACTCG NCGCTCCANT AACAACCCAC TTTATATTAT TAATNAAATT 
    GAAATCAATN TCAAATGATC AAAAAAANAA TCAGGTCCCA ATNATTTTTC 
    NCACAATCTA GCAAACAAAT NAAAATATTC ACCCCCATAG AATNTTCACA 
    NCGNCTGCTT GGGTNATNGG AAAATNNAAA AAATCGNNCC CACGTNGANA 
    ANTCCCCNAA NGGTCCNNAC CATTNCCGNC NNAGNGTNTT CGGCATCNTT 
    TNNANTNTCC CTTNAAGAAT NNGATTGTAT ANTAGACNTN TGNCTTATAA 
    N

AT5G67050.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: membrane; EXPRESSED IN: sepal, carpel, stamen, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G42930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67060.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
HECATE 1 (HEC1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G50330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR