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13-5041-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9246793 [Map]; Strand: w
      • AT1G26740.1 - [+] show detail - Ribosomal L32p protein family
        Distance: -190; Region: promoter
      • AT1G26750.1 - [+] show detail - unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-5041-1 - 5-prime edge 
    GGGATAAACT AACAAAATCC GGTTATACGA TAACAGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CCAGTCGTCT CTGGTAAAAC AATAACAGAT 
    CAAGCGAAGA AGAAAAGTGA AGAAGCTCAG CAACAATGTC GTGGATGAAA 
    GGTGATTTAC TTTCCAAAAC CAGGAGGCTT GTTGGTGGCT TAGCTACACG 
    AGAGCCTGTT TGGCTTAAAG CCATGGAAGC GTAACCCTCT CTTCTCCCAT 
    TTCTATTTCT CCAAATGATT TGGCTCGATT GATCAATTTG ATACTTCCTT 
    ATTGAATCAT CCGTTAATGG GTTTCTAATT CGGATGCAAT TGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9246802 [Map]; Strand: w
      • AT1G26740.1 - [+] show detail - Ribosomal L32p protein family
        Distance: -199; Region: promoter
      • AT1G26750.1 - [+] show detail - unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-5041-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATCAGACGAC GAAGACACAA GGGTTTCAGA AATGGCTCGA TTTGATAAAA 
    CCTCATGGTT CATGAATTAA ACCGGGTACA TCACACTCTA AATTACGGTC 
    TAAAATCGGT TAACAGAGCA ATTGTATGGT TCGTATGTCA AAACGCAGCC 
    GTTTCGTAAA TACATTTGCC TTGATAAATT TTCACCTCTT TTGGGTTTCT 
    TCTACTAGTC TTCACTTCCG TCAGCTATAG CTTTGGAGAA ACTGCATCAA 
    TGGCGTTGAG ATTGACATCG CTAAAACGCG CCGCGGTTGA GTCCTGTCGC 
    ATTTTGGAAA CCCGAAGCT

AT1G26740.1

Model type
Protein coding
Short Description
Ribosomal L32p protein family
Computational Description
Ribosomal L32p protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32p (InterPro:IPR002677); BEST Arabidopsis thaliana protein match is: Ribosomal L32p protein family (TAIR:AT1G69485.1); Has 123 Blast hits to 123 proteins in 51 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 21; Plants - 49; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26750.1

Model type
Protein coding
Computational Description
unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR