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13-5058-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94036 [Map]; Strand: c
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-5058-1 - 5-prime edge 
    ATGCTAAGGT TGTTGTCTTC ANTAAGATCC CACTCCCCAA CTATAGGTTT 
    GATNTANATN ACAAGAAGCC ACAGAGGGAG GTATTATCCG CTGCTCCTCA 
    CTCTCTTCTC TTACACTTAA CGCAAGACGG CTTGTTTTTC TTTAAAGAGC 
    AGATATATAC AAAAATATTT ACAGGTGAAT TTGCATACTG ACCTTCTTCA 
    AAGAGTTGAA GCTTACCTCA CAGAATACCT CAGTAAAAGC TCTAATAGGA 
    TAGATAGAGT CCCTGCCAAT TCCGTCTCAA GAACTAGTAG CATTAGCAGT 
    ACTGATGAAT GGTTTTCTGA GCAACCACTG CCCATCTCTG CCACCAAAAT 
    TCTTTGGCAA AGGAGTNTGC AGCCTGCGTG ATCGACAACA ATATTGGCAG 
    GTTCTGTTTA TATTANGTCC TTAATATATG CTTCATCTAT GCTNTNNGAT 
    CGGCCATTTA CTTTTGATGT GTTCCATTGA TTANGCACTN CGTATANGGC 
    CAAAANAATG TGGGATNCTC GTACAAGTCT CCCCTGCTTT TNNAAGCAAA 
    GGCATTCNGT ATTTGNCANG CTNTTTNNCA AAATCCCGGN CCTGCACAAG 
    ANNANNAACN GNAAAGNCAT GCNTNGANCN TCAANTCCGT GNNGACATCN 
    CGTCGTCCNA ATCGAACANN CGAANCGTNG ACTNNAGACG GGTCGGTCTN 
    CGNTNGTNGT ATTTAANNGC CNATCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94159 [Map]; Strand: c
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-5058-1 - 3-prime edge 
    AATGCATGAC TGCAAAAAAG AAACAGAAAT GGTTATACTA GTGAGAAAGA 
    AGAAAGAAAG GAGCAGCATG ATTGATGTAC CTATACAATC CCAGGGTTGT 
    AGCCAGAGCA GCAAGTTTAT CAAAATCCCG TCTATCTTTT TTCTCCCTGG 
    AAATAACTTC TTGCTTTAAA GAATCTTTCA AAAGCATTGA AAATCTCTTA 
    TTCCAATCAT CCAAGTCGGC ACAGTGAAAG GTACCCTCCT GCTGCAAATT 
    GATATGGTTC CAGTAGAAAG ATAAAGGGAT TTTTATAAAA TACTACTCGA

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR