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13-5064-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14790461 [Map]; Strand: w
      • AT4G30200.1 - [+] show detail - vernalization5/VIN3-like
        Distance: 0; Region: exon1 (5UTR)
      • AT4G30200.2 - [+] show detail - vernalization5/VIN3-like
        Distance: 0; Region: exon1 (5UTR)
      • AT4G30200.3 - [+] show detail - vernalization5/VIN3-like
        Distance: 0; Region: exon1 (5UTR)
      • AT4G30200.4 - [+] show detail - vernalization5/VIN3-like
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-5064-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGA 
    CAATCTCTAT CTCTCTCTAT CTCTTCTCCG CTCACAGCGA ATATCTCTCT 
    CTCTCTCTCT CTCTCTTCTC CGGTGTATNC CGNTCTCCGG GAACTTCTCC 
    GAAGAGGGAG AGAGAAAAAA AAAAACGCCC GATNNANTCT TTTGGGGGCN 
    CNAAAAATTT TTTTNAANCN NCCNCCCGGG GCCGNNNNCC NCNCGGGCCC 
    NANAA

AT4G30200.1

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G30200.2

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 283 Blast hits to 258 proteins in 40 species: Archae - 0; Bacteria - 10; Metazoa - 3; Fungi - 23; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G30200.3

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G30200.4

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: PcG protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1).
Link
InterPro Scan - TAIR