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13-5077-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28178523 [Map]; Strand: w
      • AT1G75040.1 - [+] show detail - pathogenesis-related gene 5
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5077-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CGACATTGTT CTGATCCATG ACCTTAAGCA TGTCGGGGCA AGCCGCGTTG 
    AGGTCAGAGA CACAGCCTGC GTATTTGCAA TCTCCCGATC CTCCGGATGG 
    TCTTATCCCC AGCTTGACAT TGTAACCATC TACGAGGCTC ACATCGTAGA 
    AATCTTTGCC GCCATCGCCT ACTAGAGTGA ATT

AT1G75040.1

Model type
Protein coding
Short Description
pathogenesis-related gene 5
Curator Summary
Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.
Computational Description
pathogenesis-related gene 5 (PR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75050.1); Has 1613 Blast hits to 1588 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 84; Plants - 1422; Viruses - 4; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR