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13-5079-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3015662 [Map]; Strand: w
      • AT1G09330.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -571; Region: promoter
      • AT1G09340.1 - [+] show detail - chloroplast RNA binding
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5079-1 - 5-prime edge
    GTTCTGACGA CTATCATTAT CAATTTTATC AGATGGGTTC TGCTTTTGTG 
    TGTCTGATGA GCCAAAATCC GTTCAGCACA TTTCAAAACT ATTCCTTTTA
    AAATGGGTTT AAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3015556 [Map]; Strand: w
      • AT1G09330.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -465; Region: promoter
      • AT1G09340.1 - [+] show detail - chloroplast RNA binding
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5079-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    GTCTTAGCGC CATTGAAGTC AGACAGAGAA GAAGTAAGGA GAGAGAAAGA
    AGGCTGATGC TGTTGCAACA TCATCATCTT CGCCATGGTT GATTGGTTAA
    GTCTCTGAGC AACAACTGAA GAAAAGCTCT TATTTGAAAT TGAAGTGTGT
    ATGGTGGTTC GTGGGACCTC GTCATCTTGT TCCTTCCGAT CATTAAAAGT
    CTTAAATTTT GAAGGGATAA GACAATTATC TCAGCCTCTC GCCATTTCAT
    GGTCACATAT TTACAGCCAT TGTCGTCCTC TTCTTTCTTA ACTCTTCTTT
    TGCCTTGTTG TGGATAGTGG ATAATTTTGA TCGAAACACA AGTTTTTGTG
    GTGAAATCGT AATT

AT1G09330.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09340.1

Model type
Protein coding
Short Description
chloroplast RNA binding
Curator Summary
Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.
Computational Description
chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink).
Link
InterPro Scan - TAIR