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Mutant Lines
13-5090-1

13-5090-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 38443 [Map]; Strand: w
- AT4G00100.1 - [+] show detail - ribosomal protein S13A
  Distance: 131; Region: intergenic
- AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
  Distance: 61; Region: intergenic

CTTTTAAGCA TTCGCATAGC GTTACTATAG TGTAATGAAC TGAGAGACAA 
GAGATTAGGA ATGAACTGAG AGACAAGAGA TTAGGAATGA ACTGAGAGAC 
AAGAGATTTG GAATGAACTT GAGAGACAAG AGTGACAAAG AATGTAATCC 
CGAAATAATG GTTCTTATGG AGTATAAATG GTTTTGAGTA AAAACATATA 
CGGCAAAGAC AGGGTATGAG CCGGCCAAAG AACCAACAAA AAGAGCAAGT 
GTTAAAGAGT GAAACAATCA CAAGAATCTC AGAATCAAAA AAAAAAANAN 
NGGCTCCAAN CTCNTNGCAA ATNGNNAATC NTNANNTNGC NGNTTTTTTT 
CCNCCTTTGT NGTANCCCAA NTCCCNTNTC NNAAACTTTT NGAAACCCGT 
NTNAAAATCG GGGGGGGGTT TGTANCCNAC CTNTTTTTGC NCAAAACTGA 
TTTTACCNTG AGNGANCNGC NCNTCCCCNT TCNTGGGNAA CTTNANAANG 
TCCCTTTGGG CCTNNACTTT NAAANGTCTN TCAAAAANGG GGACAAAATN 
ATTCCCNGGA NCGGGCNAAG NGTTNCCAAA ATTGAAAACC CGTAACTGNG 
CCGACCGGGC TTTTTACCAC CANTACAAGG GCTNTTTTNA NCCGNGTCCA 
ANGCCCNTAA ACCCCCCCTT GACATTGCNN TNAATGNAAG GGANGNCCCT

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 38327 [Map]; Strand: w
  - AT4G00100.1 - [+] show detail - ribosomal protein S13A
    Distance: 15; Region: intergenic
  - AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
    Distance: 177; Region: intergenic
Flanking Genome Sequence: 13-5090-1 - 3-prime edge
```
CTTAAAAGGG GATGATGGTT CCAATAGTGA TTTCATGATC ATGTGGTTAT 
CTTAAGGAAA AGAGTATAAG GATGCAAAAG CATATTCAAT AGTAAATTCA 
AGATCATACG ATTCTCTTAA ACAAGGGAGC ATAAGATTCC GGAAAAAGAA 
GAGAGGCAAA CACAAAAATC CTGCTGACAC ATTAAGACTA AAGTTGAGAA 
TT
```

AT4G00100.1

Model type: Protein coding
Short Description: ribosomal protein S13A
Curator Summary: Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational Description: ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00110.1

Model type: Protein coding
Short Description: UDP-D-glucuronate 4-epimerase 3
Curator Summary: Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description: UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link: InterPro Scan - TAIR