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13-5090-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 38443 [Map]; Strand: w
      • AT4G00100.1 - [+] show detail - ribosomal protein S13A
        Distance: 131; Region: intergenic
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: 61; Region: intergenic
    Flanking Genome Sequence: 13-5090-1 - 5-prime edge
    CTTTTAAGCA TTCGCATAGC GTTACTATAG TGTAATGAAC TGAGAGACAA 
    GAGATTAGGA ATGAACTGAG AGACAAGAGA TTAGGAATGA ACTGAGAGAC
    AAGAGATTTG GAATGAACTT GAGAGACAAG AGTGACAAAG AATGTAATCC
    CGAAATAATG GTTCTTATGG AGTATAAATG GTTTTGAGTA AAAACATATA
    CGGCAAAGAC AGGGTATGAG CCGGCCAAAG AACCAACAAA AAGAGCAAGT
    GTTAAAGAGT GAAACAATCA CAAGAATCTC AGAATCAAAA AAAAAAANAN
    NGGCTCCAAN CTCNTNGCAA ATNGNNAATC NTNANNTNGC NGNTTTTTTT
    CCNCCTTTGT NGTANCCCAA NTCCCNTNTC NNAAACTTTT NGAAACCCGT
    NTNAAAATCG GGGGGGGGTT TGTANCCNAC CTNTTTTTGC NCAAAACTGA
    TTTTACCNTG AGNGANCNGC NCNTCCCCNT TCNTGGGNAA CTTNANAANG
    TCCCTTTGGG CCTNNACTTT NAAANGTCTN TCAAAAANGG GGACAAAATN
    ATTCCCNGGA NCGGGCNAAG NGTTNCCAAA ATTGAAAACC CGTAACTGNG
    CCGACCGGGC TTTTTACCAC CANTACAAGG GCTNTTTTNA NCCGNGTCCA
    ANGCCCNTAA ACCCCCCCTT GACATTGCNN TNAATGNAAG GGANGNCCCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 38327 [Map]; Strand: w
      • AT4G00100.1 - [+] show detail - ribosomal protein S13A
        Distance: 15; Region: intergenic
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: 177; Region: intergenic
    Flanking Genome Sequence: 13-5090-1 - 3-prime edge
    CTTAAAAGGG GATGATGGTT CCAATAGTGA TTTCATGATC ATGTGGTTAT 
    CTTAAGGAAA AGAGTATAAG GATGCAAAAG CATATTCAAT AGTAAATTCA
    AGATCATACG ATTCTCTTAA ACAAGGGAGC ATAAGATTCC GGAAAAAGAA
    GAGAGGCAAA CACAAAAATC CTGCTGACAC ATTAAGACTA AAGTTGAGAA
    TT

AT4G00100.1

Model type
Protein coding
Short Description
ribosomal protein S13A
Curator Summary
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational Description
ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR