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13-5131-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23426669 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: -331; Region: promoter
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: -441; Region: promoter
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: -307; Region: promoter
    Flanking Genome Sequence: 13-5131-1 - 5-prime edge 
    GGAACATCAT ATCTATTACC TCAAGAGTCT AGTAGTTAAT TGTTACAAGA 
    TAGCGAAATT TTCACTTGTG AAGATCATTA ATAGCTATAA TTGAAAGCCA 
    TCATTTGCTT GCTTTTGTCC ATAGGAGTAA GTAACAAAGA AAAGTTAACG 
    GCTTGGAATC TTTAGTAGTT CGTGTCTGTC GTTTTGTAAA TGGACCACAT 
    AAATAGAACT TGGGGACCTA TTGGGCCTGA AAGAAAGTTA AGAGAATAGA 
    TAAGCCCACA TCATTAGAGC CCAACCTTTG CAAATGGGGG GATGAATGAA 
    TACTTGGTTG GTGCGTATTG GTTCTTTCTT CTTCTTCTTC ATCTTCCCTG 
    TTGTGTACGA AATTGGGATA CTACATATAT GGATACGCAT CATCGGAAAC 
    AGTATGTACA ATCTTTACTG ATAGAGTTTA CTACNGAGAG AGAGAGAGAG 
    AGAGAGNNGC CCTATATNNT TNCNCNANAC NANGGGNNNT GANTNNNANA 
    CTGCCTTTNG AAAAANNNGG GGGCCGNGCN CNANATNNNN NNNGGNNNNT 
    NTNNGNNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23426791 [Map]; Strand: c
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: -453; Region: promoter
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: -563; Region: promoter
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: -429; Region: promoter
      • AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 13-5131-1 - 3-prime edge 
    CCCTCAAAGT AATTACAACT TAACTTAGAT AAATATATAG TGATTGAATA 
    CAAACAAAAA AATAGACAAA CCAACCTTTC TTTTTCTGGT GAATAATCAA 
    TCTCTTCTTG TGCTTTTTTT ATATATGATA TAATT

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63450.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR