1. Home
  2. Mutant Lines
  3. 13-5139-1

13-5139-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7835149 [Map]; Strand: c
      • AT2G18010.1 - [+] show detail - SAUR-like auxin-responsive protein family
        Distance: 909; Region: intergenic
      • AT2G18020.1 - [+] show detail - Ribosomal protein L2 family
        Distance: -1953; Region: intergenic
    Flanking Genome Sequence: 13-5139-1 - 5-prime edge 
    GGGANAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGTACA 
    AGTATATGTA GGGACTCTGG TTGGTAGGAC CATAATGATC CATCACAAAA 
    ATCTGACTCA ATATAATTGA TATATACACA TAAAATCTTT TGAAATACTA 
    CTTGCTACAG TCTACATGTA AAAGGAAATG AGTCAAATTA CNGGTAATTG 
    ACACACCGAC AAATAAATAT TGAATACACG TATAGCAAAA CTTTTGTGTT 
    GAAAGAAAAC AAAACAAATT GTTTCATGAC TCGA

AT2G18010.1

Model type
Protein coding
Short Description
SAUR-like auxin-responsive protein family
Computational Description
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT4G36110.1); Has 1342 Blast hits to 1327 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1341; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G18020.1

Model type
Protein coding
Short Description
Ribosomal protein L2 family
Computational Description
embryo defective 2296 (EMB2296); FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, guard cell, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT4G36130.1); Has 10660 Blast hits to 10653 proteins in 3642 species: Archae - 317; Bacteria - 5675; Metazoa - 457; Fungi - 292; Plants - 1219; Viruses - 0; Other Eukaryotes - 2700 (source: NCBI BLink).
Link
InterPro Scan - TAIR