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13-5194-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seedling (PO:0008037)
  • albino value (PATO:0000968)
    (Seedling::albino)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14466665 [Map]; Strand: w
      • AT4G29390.1 - [+] show detail - Ribosomal protein S30 family protein
        Distance: -682; Region: promoter
      • AT4G29400.1 - [+] show detail - Protein of unknown function (DUF3531)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5194-1 - 5-prime edge 
    ATGATGAGGT AGAAGATGAG TTCTCGGCGA AGAAGAGAGG CGTTTACAGA 
    GCGAAGAAAG AGAAGATTGA TTACGATAAA GACCCTGAGT TTGCGGATAT 
    TCTTGGAGAT TGTTTAGATA ACCCAGATAA AGCTCAAAAG AAGGTGAAGT 
    TTTAAACTTT GATCTTTGGA TCTTACCATT TCGATTGAGA AGCTGTTGTT 
    GAGCTGATGT ATTGACAAAG TAACGTTTAT TGAGCTGAAA TTTTTGAGTA 
    GCTTTTGATT TTGATTGTTA TTTTGAAATG GGTTGTTTAT CAATGAACTC 
    TTTTTAGATG GAAGAGAGAT TGAGGAAGAA GAGGAACAAA ATTCTTCATA 
    CTAAGACTGG TTCTGCAACT TCGATGCCAG TGACGTTTAA CAAGTGAGTG 
    ATCCTATGTT GCTTTTGAAG TTATATGTGA TTCTCTTGGT TGATTTTGCT 
    TGCTCATTTG ATCTGCTTGT TCANTAGTTG TTGATGTTCA NTGCCTTGTT 
    CTTCTNATTG NTTATTAAAC TCTTGGNTTT GNNGNNCTGT NNNATTTNAN 
    TNTTNNAATT ANNNNNNNNG GCCGNNNACC NCNCNGNCC

AT4G29390.1

Model type
Protein coding
Short Description
Ribosomal protein S30 family protein
Computational Description
Ribosomal protein S30 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30 (InterPro:IPR006846); BEST Arabidopsis thaliana protein match is: Ribosomal protein S30 family protein (TAIR:AT5G56670.1); Has 682 Blast hits to 682 proteins in 246 species: Archae - 2; Bacteria - 0; Metazoa - 304; Fungi - 135; Plants - 106; Viruses - 1; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29400.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3531)
Computational Description
Protein of unknown function (DUF3531); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3531 (InterPro:IPR021920); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3531) (TAIR:AT5G08400.2); Has 315 Blast hits to 315 proteins in 83 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Link
InterPro Scan - TAIR