1. Home
  2. Mutant Lines
  3. 13-5197-1

13-5197-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5599614 [Map]; Strand: w
      • AT1G16380.1 - [+] show detail - Cation/hydrogen exchanger family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-5197-1 - 5-prime edge 
    GGTAAGGCGT GAACGGCGAA GAAGAAGTTC CAGGAGAAAA GCCACTTAGA 
    GCAGAGACTA AAGAGATCGA TCCACGAGCA TGACGAACGC CATAGACGCA 
    CGTCAACACT CGTAGCTCCT CGGTAGTGTC AAATAACTCA AGTGATGTTT 
    TTATATGTGC GAAACTCTTT TCTTGACTTC TAAGCAACAA AGATGTTATA 
    ACTCCGCTTA ACAAAGTCAT GATCACTAGA GCCGCAACGA ACATATCATG 
    AACTACCGGA GTAAACCATT TCTACAAAGA GAAAATCAAT AACACGGAGA 
    TGAAGATTAT TAACCGACTT GAAACCTAAA TTAACGAGAA GTCGTAATTT 
    GTTGTAATAC CTTGTACATC AAGTTAGAGT CGAGAAGAAC AAGACCTATA 
    TGACCTTTGA CGGAAAGCAT GGTTGACAAG AAAAGCCAAT ACTGCTTTGG 
    GATCTTCAAG AATGAACAAG CGAATAAAAC TCCTAGAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5599498 [Map]; Strand: w
      • AT1G16380.1 - [+] show detail - Cation/hydrogen exchanger family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-5197-1 - 3-prime edge 
    GCCTTACCTT ATGCACCTCA TACCGCTCCC GAAGAAGCGG AAAACTGAAT 
    TGTTGTACCA CGAATTAGAC GAAGATGCAG GAAATTCCAA CGGCGGAGAC 
    GATGAGTTCG GGACTAATGA AGGACTAGAG ATCAATGACT CGATCGATTC 
    GTTTACTAGA GACAGAAAAA TAATGGTCCG GCAGGTGAAA CTTGTGGCGC 
    CGATGGAGAA TATGCACGAA GAGATCTGTA ACGCCACTGA AGATCTTCGT 
    GTATCGATCG TGTTTCTTCC TTTCCATAAA CACCAGAGGA TCGACGGGAA 
    AACCACGAAT GACGGGGAAG TTTTTCGACA TATGAACCGG AAGGTTCTAA 
    AGCAAGCTCA ATGTTCGATT GGTATCTTTG TGGATAGAAA CATAACAGGG 
    TTTCACCAGC TTCACGGGTC TGATTCGGTA CAACACGTTG CTGCATTGTT 
    CTTCGGTGGT CCTGATGATC GTGAGGCTCT GTCCTTGTGC AAGTGGCTTA 
    CCAATAACTC TCAGATTCAC CTCACTGTCA TACAGTTTGT GGCGGATGAC 
    TCAAAGACAG AGAAAATTGT CGGAGACGCG GTGACCAAGG AAAACAACGA 
    AGTATTCTTG GAGATTGTTA GTGAAGATCA AACCGAAAAC AAAACAGATC 
    GAATCTTCTT ANAAGAATT

AT1G16380.1

Model type
Protein coding
Short Description
Cation/hydrogen exchanger family protein
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
ATCHX1; FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 2 (TAIR:AT1G79400.1); Has 3057 Blast hits to 3030 proteins in 956 species: Archae - 198; Bacteria - 2123; Metazoa - 0; Fungi - 129; Plants - 509; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR